BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0650000 Os03g0650000|AK070258
(186 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26580.1 | chr2:11303923-11306739 REVERSE LENGTH=165 172 6e-44
AT1G08465.1 | chr1:2676033-2679382 FORWARD LENGTH=185 170 3e-43
AT2G45190.1 | chr2:18628450-18630552 REVERSE LENGTH=230 163 5e-41
AT4G00180.1 | chr4:72804-75089 REVERSE LENGTH=241 145 1e-35
AT1G23420.1 | chr1:8317423-8319104 FORWARD LENGTH=232 130 3e-31
AT1G69180.1 | chr1:26007734-26008940 REVERSE LENGTH=182 127 3e-30
>AT2G26580.1 | chr2:11303923-11306739 REVERSE LENGTH=165
Length = 164
Score = 172 bits (437), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 107/160 (66%), Gaps = 9/160 (5%)
Query: 3 AQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAE 62
A V A E +CY+ CNFCN I AV+VP +S+ +IVTVRCGHCT+L SVN+ +Q+L
Sbjct: 2 ANSVMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRP 61
Query: 63 DHLQDNLKMHNMSFXXXXXXXXXXXXXXXVPMMFS-KNDTEHMLHVRPPEKRQRVPSAYN 121
+ N + +P S + TE + RPPEKRQRVPSAYN
Sbjct: 62 NFQATNYAVPEYG--------SSSRSHTKIPSRISTRTITEQRIVNRPPEKRQRVPSAYN 113
Query: 122 RFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161
+FIKEEI+RIKANNPDISHREAFSTAAKNWAHFP+IHFGL
Sbjct: 114 QFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 153
>AT1G08465.1 | chr1:2676033-2679382 FORWARD LENGTH=185
Length = 184
Score = 170 bits (431), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 113/173 (65%), Gaps = 9/173 (5%)
Query: 10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGL----VQALPAEDHL 65
E VCYVHC+FC TI AVSVP S+ +VTVRCGHCT+LLS+N+ G+ A P L
Sbjct: 8 ERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNI-GVSLHQTSAPPIHQDL 66
Query: 66 QDNLKMHNMSFXXXXXXXXXXXXXXXVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIK 125
Q + + H S + + + M +RPPEKRQRVPSAYNRFIK
Sbjct: 67 QPH-RQHTTSLVTRKDCASSSRSTNNLSENIDR-EAPRMPPIRPPEKRQRVPSAYNRFIK 124
Query: 126 EEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFG--LGSHESSKKLDEAIGA 176
EEI+RIKA NP+ISHREAFSTAAKNWAHFP+IHFG L ++ K+LD+++
Sbjct: 125 EEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVAG 177
>AT2G45190.1 | chr2:18628450-18630552 REVERSE LENGTH=230
Length = 229
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 103/169 (60%), Gaps = 19/169 (11%)
Query: 10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNL 69
+H+CYV CNFC TI AV+VP S+ VTVRCG CT+LLSVN+R V LPA + LQ L
Sbjct: 23 DHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYV--LPASNQLQLQL 80
Query: 70 KMHN----MSFXXXXXXXXXXXXXXXVPMMFSKNDTEHMLHV-------------RPPEK 112
H+ + + ND + + RPPEK
Sbjct: 81 GPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEK 140
Query: 113 RQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161
RQRVPSAYNRFIKEEI+RIKA NPDISHREAFS AAKNWAHFP+IHFGL
Sbjct: 141 RQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 189
>AT4G00180.1 | chr4:72804-75089 REVERSE LENGTH=241
Length = 240
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 106/190 (55%), Gaps = 28/190 (14%)
Query: 10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNL 69
+ +CYVHC+FC+T+ AVSVP +S+ VTVRCGHC++LLSV + LP+ +L +
Sbjct: 23 DQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSF 82
Query: 70 KMH--------------------NMSFXXXXXXXXXXXXXXXVPMMFSKNDTEHMLHVRP 109
NM+ V + +H+ +
Sbjct: 83 LPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPR 142
Query: 110 P-------EKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL- 161
P EKRQRVPSAYNRFIKEEI+RIKA NPDISHREAFS AAKNWAHFP+IHFGL
Sbjct: 143 PPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 202
Query: 162 GSHESSKKLD 171
H +KK +
Sbjct: 203 ADHPPTKKAN 212
>AT1G23420.1 | chr1:8317423-8319104 FORWARD LENGTH=232
Length = 231
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 91/163 (55%), Gaps = 13/163 (7%)
Query: 9 PEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNL--------RGLVQALP 60
P +C+V C FC TI VSVP S+ +VTVRCGHCTSLLSVNL L
Sbjct: 18 PGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSH 77
Query: 61 AEDHLQDNLKMHNMSFXXXXXXXXXXXXXXXVPMMFSKNDTEHMLHV-----RPPEKRQR 115
++ ++ + + + S N+ E + V +PPEKRQR
Sbjct: 78 LDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQR 137
Query: 116 VPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIH 158
PSAYN FIKEEIRR+KA NP ++H+EAFS AAKNWAHFP H
Sbjct: 138 APSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180
>AT1G69180.1 | chr1:26007734-26008940 REVERSE LENGTH=182
Length = 181
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 2 SAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPA 61
+++ P EH+ YV C+ CNTI AV +P ML+ VTV+CGHC NL L P
Sbjct: 11 ASRASPQAEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCG-----NLSFLTTTPPL 65
Query: 62 EDHLQDNLKMHNMSFXXXXXXXXXXXXXXXVPMMFSKNDTEHMLHVRPPEKRQRVPSAYN 121
+ H+ L+M SF V+PPEK+QR+PSAYN
Sbjct: 66 QGHVSLTLQMQ--SFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYN 123
Query: 122 RFIKEEIRRIKANNPDISHREAFSTAAKNWAHF-PN 156
RF+++EI+RIK+ NP+I HREAFS AAKNWA + PN
Sbjct: 124 RFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIPN 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,859,659
Number of extensions: 138210
Number of successful extensions: 367
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 8
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)