BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0650000 Os03g0650000|AK070258
(186 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0650000 Similar to Yabby9 protein 354 2e-98
Os12g0621100 Similar to Filamentous flower-like yabby prote... 223 6e-59
Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower pro... 169 8e-43
Os02g0643200 YABBY protein family protein 128 2e-30
Os03g0215200 Drooping leaf protein 122 2e-28
Os10g0508300 YABBY protein family protein 110 5e-25
Os04g0536300 Similar to Yabby15 protein (Fragment) 105 2e-23
>Os03g0650000 Similar to Yabby9 protein
Length = 186
Score = 354 bits (909), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 171/186 (91%), Positives = 171/186 (91%)
Query: 1 MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALP 60
MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALP
Sbjct: 1 MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALP 60
Query: 61 AEDHLQDNLKMHNMSFXXXXXXXXXXXXXXXVPMMFSKNDTEHMLHVRPPEKRQRVPSAY 120
AEDHLQDNLKMHNMSF VPMMFSKNDTEHMLHVRPPEKRQRVPSAY
Sbjct: 61 AEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAY 120
Query: 121 NRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSKKLDEAIGAPSPQ 180
NRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSKKLDEAIGAPSPQ
Sbjct: 121 NRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSKKLDEAIGAPSPQ 180
Query: 181 KVQRLY 186
KVQRLY
Sbjct: 181 KVQRLY 186
>Os12g0621100 Similar to Filamentous flower-like yabby protein (Fragment)
Length = 207
Score = 223 bits (568), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 126/207 (60%), Positives = 140/207 (67%), Gaps = 22/207 (10%)
Query: 1 MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALP 60
MSAQI PA E VCYVHCNFCNTI AVSVP NSMLNIVTVRCGHCT+LLSVNLRGL+ + P
Sbjct: 1 MSAQIAPA-EQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAP 59
Query: 61 A-EDHLQDNLKMHNMS-------------FXXXXXXXXXXXXXXXVPMM-FSKNDT--EH 103
A +DH +L+ +S F M+ +S+ + E
Sbjct: 60 ALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQ 119
Query: 104 MLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLG- 162
LH RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAH+PNIHFGL
Sbjct: 120 ALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSP 179
Query: 163 SHESSKKL---DEAIGAPSPQKVQRLY 186
HE KKL D APS +K+Q Y
Sbjct: 180 GHEGGKKLVDVDPIPTAPSSKKIQGFY 206
>Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower protein 1)
Length = 169
Score = 169 bits (429), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/163 (53%), Positives = 106/163 (65%), Gaps = 6/163 (3%)
Query: 1 MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALP 60
MS Q EHVCYV+CN+CNTI V+VP+N NIVTVRCGHCT +LS++L QA
Sbjct: 1 MSVQFTS--EHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQART 58
Query: 61 AEDHLQDNLKMHNMSFXXXXXXXXXXXXXXXV-PMMFSKNDTEHMLHVRPPEKRQRVPSA 119
+DH N +F + PM S+ + + +RPPEKRQRVPSA
Sbjct: 59 VQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQ---QQVSPIRPPEKRQRVPSA 115
Query: 120 YNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLG 162
YNRFIKEEI+RIK +NP+ISHREAFS AAKNWAH P +HFGL
Sbjct: 116 YNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLS 158
>Os02g0643200 YABBY protein family protein
Length = 256
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 100/203 (49%), Gaps = 39/203 (19%)
Query: 6 VPAP-EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQAL----- 59
P+P E +CYVHCN C+TI AV VP +S+ VTVRCGHC +LLSVNLRGL+
Sbjct: 18 APSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAP 77
Query: 60 ------------PAEDH-LQDNLKMHNMSFXXXXXXXXXXXXXXXVPMMFSKNDTE--HM 104
P H L D + S ++ M
Sbjct: 78 ANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQM 137
Query: 105 LHVRP----PEKRQRVPSAYN--------------RFIKEEIRRIKANNPDISHREAFST 146
+P PE + P++ N RFIK+EI+RIKA NPDISHREAFS
Sbjct: 138 PPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSA 197
Query: 147 AAKNWAHFPNIHFGLGSHESSKK 169
AAKNWAHFP+IHFGL + KK
Sbjct: 198 AAKNWAHFPHIHFGLMPDQGFKK 220
>Os03g0215200 Drooping leaf protein
Length = 194
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRG-LVQALPAEDHLQDN 68
EH+CYV C +CNT+ AV VP +++ VTV+CGHC +L ++ R +VQ L DH
Sbjct: 8 EHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPTDHPLG- 66
Query: 69 LKMHNMSFXXXXXXXXXXXXXXXVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEI 128
F V ++ V+PPEK+ R+PSAYNRF++EEI
Sbjct: 67 ------PFQGPCTDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEI 120
Query: 129 RRIKANNPDISHREAFSTAAKNWA 152
+RIKA PDI HREAFS AAKNWA
Sbjct: 121 QRIKAAKPDIPHREAFSMAAKNWA 144
>Os10g0508300 YABBY protein family protein
Length = 348
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/63 (82%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 108 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL-GSHES 166
RPPEKRQRVPSAYNRFIK+EI+RIKA NPDISHREAFS AAKNWAHFP+IHFGL H+
Sbjct: 249 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQG 308
Query: 167 SKK 169
KK
Sbjct: 309 LKK 311
>Os04g0536300 Similar to Yabby15 protein (Fragment)
Length = 266
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 54/62 (87%)
Query: 108 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESS 167
R EKRQRVPSAYNRFIK+EI+RIKA+NPDI+HREAFS AAKNWAHFP+IHFGL +
Sbjct: 165 RTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGL 224
Query: 168 KK 169
KK
Sbjct: 225 KK 226
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNL 69
E +CYVHCNFC+TI AV VP +S+ VTVRCGHC +LLSVNLRGL+ LPA + L
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLL--LPAAASTANQL 86
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,107,498
Number of extensions: 211959
Number of successful extensions: 618
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 11
Length of query: 186
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 91
Effective length of database: 12,075,471
Effective search space: 1098867861
Effective search space used: 1098867861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)