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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0643200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : YABBY protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0239) R2 : 0.0179
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.145 (0.0503) R2dN8 : 0.0231 R2N8 : 0.0179
σ : 0.45
deviance : 92.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.15 0.434 3.49 0.146 0.294 -0.582 0.0392 -0.835 -0.356 7.07 70.35 4842 -- --
85.76 0.431 3.49 0.0444 0.306 -0.597 0.118 -- -0.357 7.98 66.32 5154 -- --
85.14 0.43 3.49 0.14 0.298 -0.581 -- -0.793 -0.356 7.1 69.66 4874 -- --
85.71 0.431 3.48 0.0354 0.293 -0.609 -- -- -0.362 7.76 66 5150 -- --
87.98 0.437 3.49 0.135 -- -0.509 -- -0.683 -0.32 -- 68 5699 -- --
90.58 0.446 3.44 -0.0216 0.213 -- -0.0713 -- -0.151 7.07 -- -- -- --
90.59 0.446 3.44 -0.0227 0.213 -- -- -- -0.151 7.23 -- -- -- --
88.63 0.438 3.49 0.0363 -- -0.54 -- -- -0.347 -- 67.05 5667 -- --
85.74 0.431 3.48 -- 0.292 -0.602 -- -- -0.365 7.75 66 5150 -- --
92.99 0.451 3.44 -0.0188 -- -- -- -- -0.147 -- -- -- -- --
90.6 0.445 3.44 -- 0.212 -- -- -- -0.148 7.23 -- -- -- --
88.66 0.439 3.49 -- -- -0.529 -- -- -0.338 -- 66.18 5663 -- --
92.99 0.45 3.44 -- -- -- -- -- -0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.04 humidity 90.0 4320 < th dose dependent rect. 4 4
4 81.76 humidity 50.0 4320 > th dose dependent rect. 3 6
8 82.23 temperature 10.0 90 > th dose dependent rect. 3 22
21 82.49 temperature 10.0 10 > th dose dependent rect. 3 23
25 82.52 humidity 80.0 4320 > th dose independent rect. 3 9
27 82.59 humidity 90.0 90 < th dose independent rect. 1 4
38 82.70 wind 1.0 10 < th dose dependent rect. 2 1
44 82.74 humidity 80.0 4320 < th dose independent rect. 3 9
45 82.74 atmosphere 1005.0 90 > th dose dependent rect. 1 2
49 82.78 humidity 80.0 4320 > th dose independent rect. 4 4
60 82.90 temperature 15.0 30 > th dose dependent rect. 3 17
66 82.99 atmosphere 1005.0 10 > th dose dependent rect. 2 2
77 83.05 temperature 25.0 90 > th dose independent rect. 2 1
78 83.05 humidity 90.0 90 < th dose independent rect. 2 1
85 83.09 temperature 10.0 10 > th dose dependent rect. 5 15
94 83.15 wind 1.0 10 < th dose independent rect. 2 1
109 83.21 humidity 80.0 4320 > th dose independent rect. 23 14
113 83.22 temperature 30.0 10 < th dose dependent rect. 2 1
116 83.24 humidity 80.0 4320 < th dose independent rect. 4 4
119 83.24 atmosphere 1015.0 10 < th dose dependent rect. 2 1
133 83.30 temperature 10.0 10 > th dose independent rect. 2 1
135 83.30 temperature 30.0 10 < th dose independent rect. 2 1
136 83.30 humidity 50.0 10 > th dose independent rect. 2 1
139 83.30 atmosphere 995.0 10 > th dose independent rect. 2 1
140 83.30 atmosphere 1010.0 10 < th dose independent rect. 2 1
142 83.30 radiation 1.0 10 < th dose independent rect. 2 1
147 83.30 precipitation 0.1 10 < th dose independent rect. 2 1
149 83.30 wind 9.0 10 < th dose independent rect. 3 23
150 83.30 temperature 10.0 10 > th dose independent rect. 3 23
151 83.30 radiation 1.0 10 < th dose dependent rect. 2 1
156 83.30 precipitation 0.1 10 < th dose dependent rect. 2 1
157 83.30 humidity 90.0 4320 < th dose dependent rect. 23 11
165 83.33 humidity 50.0 10 > th dose dependent rect. 2 1
185 83.38 temperature 10.0 10 > th dose dependent rect. 2 1
191 83.39 humidity 80.0 4320 > th dose independent sin 5 NA
200 83.41 atmosphere 1015.0 720 < th dose independent rect. 3 8
214 83.45 atmosphere 995.0 10 > th dose dependent rect. 2 1
227 83.50 atmosphere 995.0 10 > th dose independent rect. 3 23
236 83.52 humidity 70.0 14400 > th dose independent rect. 8 1
258 83.55 atmosphere 1005.0 10 > th dose independent rect. 2 1
295 83.57 humidity 70.0 14400 < th dose independent rect. 8 1
316 83.61 humidity 80.0 4320 < th dose independent sin 5 NA
322 83.62 wind 1.0 14400 < th dose dependent rect. 6 2
340 83.67 wind 1.0 30 > th dose independent rect. 2 1
359 83.71 temperature 25.0 90 > th dose independent rect. 1 3
390 83.82 humidity 70.0 4320 > th dose dependent sin 5 NA
408 83.86 temperature 10.0 90 > th dose dependent rect. 3 8
432 83.90 humidity 90.0 1440 > th dose dependent rect. 2 1
453 83.98 humidity 90.0 270 < th dose independent rect. 22 6
477 84.03 temperature 25.0 90 > th dose dependent rect. 1 3
531 84.15 wind 9.0 30 < th dose dependent rect. 3 23
542 84.18 humidity 50.0 4320 > th dose independent rect. 12 1
552 84.19 humidity 50.0 4320 > th dose dependent sin 6 NA
563 84.22 radiation 1.0 43200 < th dose dependent rect. 3 1
567 84.24 wind 1.0 14400 < th dose independent rect. 6 2
569 84.24 humidity 90.0 4320 < th dose dependent sin 7 NA
592 84.28 humidity 50.0 4320 < th dose independent rect. 12 1
602 84.30 atmosphere 995.0 10 > th dose dependent rect. 11 17
626 84.36 humidity 90.0 4320 > th dose independent rect. 3 1
635 84.38 precipitation 0.1 10 < th dose independent rect. 3 23
639 84.38 precipitation 0.1 10 < th dose dependent rect. 3 23
659 84.43 humidity 90.0 720 > th dose independent rect. 3 1
675 84.47 wind 5.0 14400 < th dose independent rect. 11 1
677 84.47 temperature 15.0 90 > th dose independent rect. 3 8
680 84.47 temperature 30.0 90 < th dose independent rect. 11 16
689 84.49 radiation 1.0 270 < th dose independent rect. 7 20
716 84.53 temperature 15.0 270 > th dose independent rect. 3 14
726 84.54 wind 9.0 90 < th dose dependent rect. 3 16
729 84.54 radiation 1.0 270 < th dose dependent rect. 7 20
738 84.58 humidity 70.0 1440 > th dose dependent rect. 2 1
742 84.59 wind 7.0 90 < th dose independent rect. 4 15
774 84.64 temperature 30.0 720 < th dose independent rect. 15 22
775 84.64 wind 5.0 1440 < th dose dependent rect. 2 1
781 84.65 temperature 20.0 270 < th dose independent rect. 5 7
796 84.66 temperature 25.0 90 < th dose dependent rect. 7 11
834 84.72 humidity 50.0 1440 > th dose dependent rect. 2 3
845 84.74 humidity 90.0 270 < th dose independent rect. 19 9
853 84.75 wind 9.0 90 < th dose dependent rect. 3 8
868 84.77 wind 1.0 14400 > th dose independent rect. 6 2
871 84.77 wind 7.0 90 < th dose independent rect. 3 8
904 84.81 atmosphere 1015.0 10 < th dose independent rect. 3 23
905 84.81 humidity 50.0 1440 > th dose dependent rect. 4 1
912 84.82 wind 1.0 1440 > th dose dependent rect. 2 1
942 84.86 temperature 15.0 720 > th dose independent rect. 3 8
953 84.87 humidity 80.0 720 < th dose independent rect. 23 11