BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0643200 Os02g0643200|AK106784
(256 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45190.1 | chr2:18628450-18630552 REVERSE LENGTH=230 189 1e-48
AT4G00180.1 | chr4:72804-75089 REVERSE LENGTH=241 161 3e-40
AT1G08465.1 | chr1:2676033-2679382 FORWARD LENGTH=185 151 3e-37
AT2G26580.1 | chr2:11303923-11306739 REVERSE LENGTH=165 126 1e-29
AT1G23420.1 | chr1:8317423-8319104 FORWARD LENGTH=232 105 2e-23
AT1G69180.1 | chr1:26007734-26008940 REVERSE LENGTH=182 87 1e-17
>AT2G45190.1 | chr2:18628450-18630552 REVERSE LENGTH=230
Length = 229
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 144/251 (57%), Gaps = 36/251 (14%)
Query: 9 AVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANXXXXXXXXX 68
AV DH SP++ LCYV CN C TILAV VP +SLFKTVTVRCG C N
Sbjct: 12 AVCSPDHF---SPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSY 68
Query: 69 XXXXXXXXXXNQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAXXXXXXXXXXXXXXXX 128
QL GP S +P +L+E+ PS +
Sbjct: 69 VLPASNQL---QLQLGPH--SYFNPQDILEELR-DAPSNMNMMMMNQH------------ 110
Query: 129 XXNAPAMQ-MPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNP 187
P M +P + Q+ E+PK P NRPPEKRQRVPSAYNRFIK+EIQRIKAGNP
Sbjct: 111 ----PTMNDIPSFMDLHQQHEIPKAPPV--NRPPEKRQRVPSAYNRFIKEEIQRIKAGNP 164
Query: 188 DISHREAFSAAAKNWAHFPHIHFGLMPD-QGFKKTFKP-QDGSEDILLKDSLYXXXXXXX 245
DISHREAFSAAAKNWAHFPHIHFGL+PD Q KKT P Q+G +++++K+ Y
Sbjct: 165 DISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKKTNMPQQEGEDNMVMKEGFY------A 218
Query: 246 XXXXNMGVTPF 256
N+GVTP+
Sbjct: 219 PAAANVGVTPY 229
>AT4G00180.1 | chr4:72804-75089 REVERSE LENGTH=241
Length = 240
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 125/233 (53%), Gaps = 22/233 (9%)
Query: 11 FPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANXXXXXXXXXXX 70
FP DH S T+QLCYVHC+ CDT+LAV VP SSLFKTVTVRCGHC+N
Sbjct: 14 FPPDHF---SSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRAL 70
Query: 71 XXXXXXXXNQLHFGPSLL---SPTSPHGLLDEVAFQTPSLLMEQAXXXXXXXXXXXXXXX 127
+ G S L P P LL+E+ ++ M
Sbjct: 71 LLPSVS-----NLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHL- 124
Query: 128 XXXNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNP 187
M + V E+P+ PA+ +R VPSAYNRFIK+EIQRIKAGNP
Sbjct: 125 ------VMATRNGRSVDHLQEMPRPPPANRPPEKRQR--VPSAYNRFIKEEIQRIKAGNP 176
Query: 188 DISHREAFSAAAKNWAHFPHIHFGLMPDQ--GFKKTFKPQDGSEDILLKDSLY 238
DISHREAFSAAAKNWAHFPHIHFGLM D K + Q+G + ++ ++ Y
Sbjct: 177 DISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFY 229
>AT1G08465.1 | chr1:2676033-2679382 FORWARD LENGTH=185
Length = 184
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 108/201 (53%), Gaps = 42/201 (20%)
Query: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANXXXXXXXXXXXXXXXXXXXNQL 81
+E++CYVHC+ C TILAV VP +SLF VTVRCGHC N L
Sbjct: 7 SERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLL------------------SL 48
Query: 82 HFGPSLLSPTSP--HGLLDEVAFQTPSLLMEQAXXXXXXXXXXXXXXXXXXNAPAMQMPP 139
+ G SL ++P H L T SL+ + + A +MPP
Sbjct: 49 NIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRK---DCASSSRSTNNLSENIDREAPRMPP 105
Query: 140 AKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAA 199
RPPEKRQRVPSAYNRFIK+EIQRIKA NP+ISHREAFS AA
Sbjct: 106 I------------------RPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAA 147
Query: 200 KNWAHFPHIHFGLMPDQGFKK 220
KNWAHFPHIHFGL D G KK
Sbjct: 148 KNWAHFPHIHFGLKLD-GNKK 167
>AT2G26580.1 | chr2:11303923-11306739 REVERSE LENGTH=165
Length = 164
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 92/196 (46%), Gaps = 45/196 (22%)
Query: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANXXXXXXXXXXXXXXXXXXXNQL 81
TEQLCY+ CN C+ ILAV VPCSSLF VTVRCGHC N
Sbjct: 8 TEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQATN 67
Query: 82 HFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAXXXXXXXXXXXXXXXXXXNAPAMQMPPAK 141
+ P S + H + PS + + + +
Sbjct: 68 YAVPEYGSSSRSHT-------KIPSRISTRT------------------------ITEQR 96
Query: 142 PVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 201
V + PE + P++ N +FIK+EIQRIKA NPDISHREAFS AAKN
Sbjct: 97 IVNRPPEKRQRVPSAYN--------------QFIKEEIQRIKANNPDISHREAFSTAAKN 142
Query: 202 WAHFPHIHFGLMPDQG 217
WAHFPHIHFGLM +
Sbjct: 143 WAHFPHIHFGLMLESN 158
>AT1G23420.1 | chr1:8317423-8319104 FORWARD LENGTH=232
Length = 231
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 87/186 (46%), Gaps = 25/186 (13%)
Query: 24 QLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANXXXXXXXXXXXXXXXXXXXNQLHF 83
Q+C+V C C TIL V VP +SL VTVRCGHC + + F
Sbjct: 20 QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLM-------------KASF 66
Query: 84 GPSLLSPTSPHGLLDEVAFQTPSLLMEQAXXXXXXXXXXXXXXXXXXNAPAMQMPPAKPV 143
P L + LDE E+ N+P + +
Sbjct: 67 IPLHLLASL--SHLDETG-------KEEVAATDGVEEEAWKVNQEKENSPTTLVSSS--- 114
Query: 144 QQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWA 203
E E N+PPEKRQR PSAYN FIK+EI+R+KA NP ++H+EAFS AAKNWA
Sbjct: 115 DNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWA 174
Query: 204 HFPHIH 209
HFP H
Sbjct: 175 HFPPAH 180
>AT1G69180.1 | chr1:26007734-26008940 REVERSE LENGTH=182
Length = 181
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 23 EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANXXXXXXXXXXXXXXXXXXXNQLH 82
E L YV C+ C+TILAVG+P + TVTV+CGHC N
Sbjct: 19 EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNL---------------------- 56
Query: 83 FGPSLLSPTSPHGLLDEVAFQTPSLLMEQAXXXXXXXXXXXXXXXXXXNAPAMQMPPAKP 142
S L+ T P L V+ L Q+ ++ P
Sbjct: 57 ---SFLTTTPP--LQGHVSLT----LQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPF 107
Query: 143 VQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 202
V + PE + P++ NR F++DEIQRIK+ NP+I HREAFSAAAKNW
Sbjct: 108 VVKPPEKKQRLPSAYNR--------------FMRDEIQRIKSANPEIPHREAFSAAAKNW 153
Query: 203 AHF 205
A +
Sbjct: 154 AKY 156
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,869,354
Number of extensions: 175084
Number of successful extensions: 716
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 11
Length of query: 256
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 160
Effective length of database: 8,474,633
Effective search space: 1355941280
Effective search space used: 1355941280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)