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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0508300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : YABBY protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.47 (0.0566) R2 : 0.094
β1 : 1.01 (0.227) R2dD : 0.0619 R2D : -0.0484
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.523 (0.244) R2dE : 0.0189 R2E : -0.0782
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.41 (0.836) R2dD*E : 0.0872 R2D*E : 0.00225
γ1 : -0.466 (0.147) R2dN8 : 0.0502 R2N8 : 0.0226
σ : 0.94
deviance : 407.66
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 88.85
memory length : 4505
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
404.65 0.945 3.47 1.02 0.251 0.555 0.07 4.28 -0.491 7.96 89 4697 -- --
426.47 0.962 3.4 0.376 0.259 0.601 0.211 -- -0.536 7.65 79.02 3882 -- --
404.66 0.937 3.47 1.02 0.25 0.554 -- 4.27 -0.49 7.88 88.99 4690 -- --
425.13 0.96 3.41 0.38 0.288 0.689 -- -- -0.575 7.75 94 3618 -- --
407.66 0.94 3.47 1.01 -- 0.523 -- 4.41 -0.466 -- 88.85 4505 -- --
431.85 0.974 3.36 0.284 0.208 -- -0.239 -- -0.382 8.08 -- -- -- --
431.93 0.973 3.36 0.278 0.209 -- -- -- -0.381 8.79 -- -- -- --
427.32 0.963 3.38 0.356 -- 0.546 -- -- -0.441 -- 93.32 7072 -- --
428.75 0.964 3.41 -- 0.292 0.63 -- -- -0.602 8.68 93.99 3618 -- --
434.4 0.974 3.37 0.279 -- -- -- -- -0.379 -- -- -- -- --
433.97 0.974 3.37 -- 0.209 -- -- -- -0.412 8.69 -- -- -- --
430.72 0.967 3.39 -- -- 0.54 -- -- -0.455 -- 93 7072 -- --
436.45 0.975 3.38 -- -- -- -- -- -0.41 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 400.32 temperature 20 10 < th dose dependent rect. 7 12
3 400.66 temperature 20 90 < th dose independent rect. 7 11
4 400.69 temperature 20 90 < th dose dependent rect. 7 11
8 401.05 wind 1 14400 < th dose independent rect. 2 1
10 401.15 wind 1 14400 < th dose dependent rect. 2 1
12 401.45 humidity 80 4320 > th dose dependent rect. 22 3
16 402.05 temperature 20 90 < th dose dependent rect. 8 1
18 402.11 humidity 90 4320 < th dose independent rect. 22 4
20 402.40 humidity 80 4320 > th dose dependent rect. 23 1
21 402.48 atmosphere 1005 10 < th dose dependent rect. 3 21
29 402.71 wind 1 14400 > th dose independent rect. 2 1
31 402.75 humidity 50 4320 > th dose dependent rect. 22 3
34 402.78 atmosphere 1005 90 < th dose dependent rect. 2 22
41 402.93 humidity 90 4320 < th dose dependent rect. 22 2
45 403.01 temperature 20 30 < th dose independent rect. 7 1
69 403.52 wind 5 10 > th dose independent rect. 8 1
72 403.52 wind 5 10 > th dose dependent rect. 8 1
83 403.62 atmosphere 1005 270 < th dose dependent rect. 16 22
93 403.78 temperature 20 90 < th dose independent rect. 7 5
96 403.82 temperature 20 10 < th dose dependent rect. 7 7
165 404.29 atmosphere 1000 10 < th dose independent rect. 3 12
168 404.33 wind 9 14400 > th dose dependent rect. 13 1
181 404.56 atmosphere 1005 10 < th dose dependent rect. 3 19
188 404.64 atmosphere 1005 10 < th dose dependent rect. 18 21
194 404.72 humidity 80 14400 < th dose dependent rect. 19 11
195 404.72 atmosphere 1005 90 < th dose dependent rect. 2 12
201 404.76 atmosphere 1005 270 < th dose dependent rect. 23 22
203 404.78 atmosphere 1005 10 < th dose dependent rect. 16 23
207 404.80 atmosphere 1005 90 < th dose dependent rect. 2 19
240 405.09 humidity 80 14400 < th dose dependent rect. 20 7
243 405.15 humidity 70 43200 > th dose dependent rect. 21 1
280 405.31 humidity 80 4320 > th dose independent rect. 21 2
295 405.43 humidity 90 4320 < th dose independent rect. 16 12
303 405.50 humidity 90 4320 > th dose independent rect. 22 4
325 405.69 humidity 90 4320 < th dose independent sin 11 NA
329 405.70 humidity 80 14400 < th dose independent sin 9 NA
371 405.95 humidity 90 4320 < th dose independent rect. 21 11
379 406.00 humidity 80 4320 > th dose dependent rect. 16 12
384 406.05 humidity 80 43200 > th dose independent rect. 13 16
386 406.08 humidity 90 4320 < th dose independent rect. 21 14
412 406.27 humidity 90 4320 < th dose independent rect. 21 17
414 406.27 atmosphere 1005 90 < th dose dependent rect. 5 23
415 406.28 humidity 80 4320 > th dose dependent sin 12 NA
417 406.28 atmosphere 1005 270 < th dose dependent no NA NA
443 406.43 atmosphere 1005 10 < th dose dependent rect. 7 23
460 406.46 atmosphere 1005 10 < th dose dependent rect. 23 23
470 406.49 atmosphere 1000 10 > th dose independent rect. 18 23
474 406.51 atmosphere 1005 10 < th dose dependent no NA NA
478 406.52 atmosphere 1005 10 < th dose dependent rect. 11 23
492 406.59 humidity 90 4320 < th dose independent rect. 16 16
531 406.70 atmosphere 1005 90 < th dose dependent rect. 9 23
532 406.70 atmosphere 1005 10 < th dose dependent rect. 13 23
534 406.71 wind 1 43200 < th dose dependent rect. 9 3
549 406.77 atmosphere 1005 10 < th dose dependent rect. 21 23
558 406.80 humidity 80 43200 < th dose independent rect. 13 16
561 406.80 atmosphere 1005 10 < th dose dependent rect. 9 23
563 406.81 humidity 80 14400 > th dose independent sin 9 NA
570 406.83 humidity 80 43200 > th dose independent sin 15 NA
587 406.87 humidity 80 4320 > th dose dependent rect. 18 13
592 406.90 temperature 30 14400 > th dose independent rect. 8 1
613 406.91 humidity 90 4320 < th dose independent rect. 21 22
622 406.92 atmosphere 1005 10 < th dose dependent rect. 5 23
643 406.98 wind 9 14400 > th dose dependent rect. 15 1
647 406.99 humidity 80 43200 < th dose independent rect. 14 14
660 407.01 humidity 50 4320 > th dose dependent rect. 19 12
661 407.01 atmosphere 1005 270 < th dose dependent rect. 23 15
662 407.02 humidity 90 4320 < th dose independent rect. 6 22
664 407.03 humidity 80 14400 > th dose independent rect. 22 12
702 407.13 atmosphere 1000 10 < th dose independent rect. 3 17
727 407.19 wind 1 43200 < th dose independent rect. 10 1
730 407.20 temperature 30 14400 < th dose independent rect. 20 13
743 407.23 temperature 30 14400 < th dose independent rect. 23 10
758 407.26 wind 1 43200 < th dose dependent rect. 10 1
760 407.27 wind 5 4320 > th dose independent rect. 18 1
767 407.28 wind 3 43200 < th dose dependent rect. 13 11
782 407.32 wind 1 43200 < th dose independent rect. 9 3
792 407.33 atmosphere 995 10 > th dose dependent rect. 8 23
818 407.39 temperature 30 14400 < th dose independent rect. 5 4
830 407.42 temperature 30 14400 < th dose independent rect. 8 1
849 407.44 temperature 30 14400 > th dose dependent rect. 8 1
865 407.45 wind 5 4320 < th dose independent rect. 18 1
887 407.51 atmosphere 1005 90 < th dose dependent sin 4 NA
924 407.58 humidity 80 14400 > th dose independent rect. 20 9
927 407.59 humidity 90 43200 < th dose dependent rect. 21 1
951 407.64 humidity 80 43200 < th dose independent sin 15 NA
957 407.65 wind 5 43200 < th dose dependent rect. 23 1
965 407.66 humidity 80 43200 > th dose independent rect. 17 22
991 407.71 temperature 10 43200 > th dose dependent rect. 19 1
992 407.71 temperature 30 43200 < th dose dependent rect. 19 1
999 407.73 humidity 90 4320 < th dose independent rect. 9 19