BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0508300 Os10g0508300|Os10g0508300
(348 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0508300 YABBY protein family protein 492 e-139
Os04g0536300 Similar to Yabby15 protein (Fragment) 206 2e-53
Os02g0643200 YABBY protein family protein 196 3e-50
Os12g0621100 Similar to Filamentous flower-like yabby prote... 119 4e-27
Os03g0650000 Similar to Yabby9 protein 110 1e-24
Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower pro... 107 2e-23
Os03g0215200 Drooping leaf protein 80 2e-15
>Os10g0508300 YABBY protein family protein
Length = 348
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/332 (76%), Positives = 255/332 (76%)
Query: 17 FRPAXXXXXXXXXXXKFPAAAAAMREMVLPPVAAAAADSEQEQLCYVHCHYCDTVLVVSD 76
FRPA KFPAAAAAMREMVLPPVAAAAADSEQEQLCYVHCHYCDTVLVVSD
Sbjct: 17 FRPAVVQREQQVVEEKFPAAAAAMREMVLPPVAAAAADSEQEQLCYVHCHYCDTVLVVSD 76
Query: 77 LRSNHAHFLSICVHLALDSRAFLVHPWRRVLQVSVPSSSLFETVTVRCGHCSSLLTVNMR 136
LRSNHAHFLSICVHLALDSRAFLVHPWRRVLQVSVPSSSLFETVTVRCGHCSSLLTVNMR
Sbjct: 77 LRSNHAHFLSICVHLALDSRAFLVHPWRRVLQVSVPSSSLFETVTVRCGHCSSLLTVNMR 136
Query: 137 GLLLXXXXXXXXXXXXXXXXXXXXXXXHFPHSLNLAPANPPHHHSLLDEISTANSPTXXX 196
GLLL HFPHSLNLAPANPPHHHSLLDEISTANSPT
Sbjct: 137 GLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHSLNLAPANPPHHHSLLDEISTANSPTQLL 196
Query: 197 XXXXXXXXXMXXXXXXXXXXXXXXXXXXXXXTSQGKAAAKEPSPRTNTAVINRPPEKRQR 256
M TSQGKAAAKEPSPRTNTAVINRPPEKRQR
Sbjct: 197 LEQHGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQR 256
Query: 257 VPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQGLKKTSLLP 316
VPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQGLKKTSLLP
Sbjct: 257 VPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQGLKKTSLLP 316
Query: 317 QDHQRKDGLLKEGLYXXXXXXXXXXNMGVAPY 348
QDHQRKDGLLKEGLY NMGVAPY
Sbjct: 317 QDHQRKDGLLKEGLYAAAAAAAAAANMGVAPY 348
>Os04g0536300 Similar to Yabby15 protein (Fragment)
Length = 266
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/297 (42%), Positives = 150/297 (50%), Gaps = 59/297 (19%)
Query: 55 SEQEQLCYVHCHYCDTVLVVSDLRSNHAHFLSICVHLALDSRAFLVHPWRRVLQVSVPSS 114
+EQEQLCYVHC++CDT+L V VP S
Sbjct: 26 AEQEQLCYVHCNFCDTILAVG-----------------------------------VPCS 50
Query: 115 SLFETVTVRCGHCSSLLTVNMRGLLLXXXXXXXXXXXXXXXXXXXXXXXHFPHSLNLAPA 174
SLF+TVTVRCGHC++LL+VN+RGLLL F +L L+P
Sbjct: 51 SLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLP-------------FGQAL-LSPT 96
Query: 175 NPPHHHSLLDEISTANSPTXXXXXXXXXXXXMXXXXXXXXXXXXXXXXXXXXXTSQGKAA 234
+P H LLDE+ + +P ++ KA
Sbjct: 97 SP---HGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMA---SAANKAT 150
Query: 235 AKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAH 294
+EP N NR EKRQRVPSAYNRFIKDEIQRIKA NPDI+HREAFSAAAKNWAH
Sbjct: 151 QREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAH 210
Query: 295 FPHIHFGLMPDHQGLKKTSLLPQDHQRKDGLLKEGLY---XXXXXXXXXXNMGVAPY 348
FPHIHFGLMPD QGLKKT + QD + L K+GLY +MGV P+
Sbjct: 211 FPHIHFGLMPD-QGLKKTGIQSQDGAGECMLFKDGLYAAAAAAAAATAASSMGVTPF 266
>Os02g0643200 YABBY protein family protein
Length = 256
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/304 (43%), Positives = 152/304 (50%), Gaps = 61/304 (20%)
Query: 47 PVAAAAADSEQEQLCYVHCHYCDTVLVVSDLRSNHAHFLSICVHLALDSRAFLVHPWRRV 106
P+ AA S EQLCYVHC+ CDT+L V
Sbjct: 12 PLDHLAAPSPTEQLCYVHCNCCDTILAVG------------------------------- 40
Query: 107 LQVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLLXXXXXXXXXXXXXXXXXXXXXXXHFP 166
VP SSLF+TVTVRCGHC++LL+VN+RG HF
Sbjct: 41 ----VPCSSLFKTVTVRCGHCANLLSVNLRG------------LLLPAPAPAPANQLHFG 84
Query: 167 HSLNLAPANPPHHHSLLDEISTANSPTXXXXXXXXXXXXMXXXXXXXXXXXXXXXXXXXX 226
SL L+P +P H LLDE++ +P+
Sbjct: 85 PSL-LSPTSP---HGLLDEVAF-QTPSLLMEQAASASLSSITGRSSSSCASNAPAMQ--- 136
Query: 227 XTSQGKAAAKEPS-PRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAF 285
K +EP P+ A NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAF
Sbjct: 137 -MPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAF 195
Query: 286 SAAAKNWAHFPHIHFGLMPDHQGLKKTSLLPQDHQRKDGLLKEGLY-XXXXXXXXXXNMG 344
SAAAKNWAHFPHIHFGLMPD QG KKT PQD +D LLK+ LY NMG
Sbjct: 196 SAAAKNWAHFPHIHFGLMPD-QGFKKT-FKPQDGS-EDILLKDSLYAAAAAAAAAAANMG 252
Query: 345 VAPY 348
V P+
Sbjct: 253 VTPF 256
>Os12g0621100 Similar to Filamentous flower-like yabby protein (Fragment)
Length = 207
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 58/63 (92%)
Query: 249 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQG 308
RPPEKRQRVPSAYNRFIK+EI+RIKA NPDISHREAFS AAKNWAH+P+IHFGL P H+G
Sbjct: 124 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEG 183
Query: 309 LKK 311
KK
Sbjct: 184 GKK 186
>Os03g0650000 Similar to Yabby9 protein
Length = 186
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/63 (82%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 249 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQG 308
RPPEKRQRVPSAYNRFIK+EI+RIKA NPDISHREAFS AAKNWAHFP+IHFGL H+
Sbjct: 108 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL-GSHES 166
Query: 309 LKK 311
KK
Sbjct: 167 SKK 169
>Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower protein 1)
Length = 169
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 229 SQGKAAAKEPSPRTNTAVI-NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSA 287
+Q + A P P + V RPPEKRQRVPSAYNRFIK+EIQRIK NP+ISHREAFSA
Sbjct: 83 NQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSA 142
Query: 288 AAKNWAHFPHIHFGL 302
AAKNWAH P +HFGL
Sbjct: 143 AAKNWAHLPRLHFGL 157
>Os03g0215200 Drooping leaf protein
Length = 194
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 234 AAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWA 293
+ E SPR V +PPEK+ R+PSAYNRF+++EIQRIKA PDI HREAFS AAKNWA
Sbjct: 87 TSNEGSPRAPFVV--KPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.132 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,557,790
Number of extensions: 338557
Number of successful extensions: 1347
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1344
Number of HSP's successfully gapped: 7
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)