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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0536300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Yabby15 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0287) R2 : 0.00271
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0671 (0.0603) R2dN8 : 0.0035 R2N8 : 0.00271
σ : 0.54
deviance : 133.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
113.5 0.501 3.37 -0.636 0.34 6.15 0.406 -19.4 0.137 9.35 0.3567 1211 -- --
127.12 0.529 3.19 0.0592 0.321 0.236 0.365 -- 0.0739 9.16 0.3567 1211 -- --
112.95 0.495 3.43 -0.839 0.35 7.42 -- -24 0.109 9.37 0.4442 1230 -- --
117.41 0.505 3.18 -0.0535 0.337 1.05 -- -- 0.106 9.29 1.349 1215 -- --
119.67 0.509 3.42 -0.825 -- 7.46 -- -24.3 0.126 -- 0.4417 1227 -- --
127.18 0.529 3.19 0.062 0.321 -- 0.364 -- 0.0733 9.13 -- -- -- --
127.64 0.529 3.19 0.0747 0.32 -- -- -- 0.0736 9.09 -- -- -- --
124.01 0.519 3.2 -0.0586 -- 0.991 -- -- 0.104 -- 1.325 1205 -- --
117.49 0.505 3.18 -- 0.336 1.06 -- -- 0.11 9.44 1.36 1194 -- --
133.55 0.54 3.2 0.074 -- -- -- -- 0.0754 -- -- -- -- --
127.79 0.529 3.2 -- 0.32 -- -- -- 0.0652 9.08 -- -- -- --
124.09 0.519 3.19 -- -- 0.983 -- -- 0.11 -- 1.334 1193 -- --
133.69 0.54 3.2 -- -- -- -- -- 0.0671 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.92 precipitation 1e-01 1440 < th dose independent rect. 15 3
2 110.92 precipitation 1e-01 1440 < th dose dependent rect. 15 3
5 111.24 precipitation 1e-01 1440 > th dose independent rect. 15 3
10 111.58 atmosphere 1e+03 1440 > th dose independent rect. 8 1
13 111.88 precipitation 1e-01 1440 > th dose dependent rect. 8 10
22 112.27 precipitation 1e-01 1440 > th dose independent rect. 10 8
24 112.32 precipitation 1e-01 1440 > th dose dependent rect. 12 6
27 112.39 precipitation 1e-01 1440 < th dose independent rect. 9 9
28 112.39 precipitation 1e-01 1440 < th dose dependent rect. 9 9
29 112.41 precipitation 1e-01 1440 > th dose independent rect. 8 10
30 112.44 precipitation 1e-01 1440 < th dose independent rect. 7 11
32 112.44 precipitation 1e-01 1440 < th dose dependent rect. 7 11
47 112.65 atmosphere 1e+03 1440 < th dose independent rect. 8 1
70 113.11 atmosphere 1e+03 1440 < th dose dependent rect. 9 1
73 113.18 precipitation 1e-01 1440 > th dose dependent sin 20 NA
74 113.19 precipitation 1e-01 1440 > th dose dependent rect. 16 1
123 113.72 precipitation 1e-01 1440 > th dose dependent rect. 8 18
161 114.00 precipitation 1e-01 1440 > th dose dependent rect. 14 13
168 114.04 wind 9e+00 43200 > th dose dependent rect. 20 1
248 114.67 precipitation 1e-01 1440 < th dose independent rect. 15 12
250 114.67 precipitation 1e-01 1440 < th dose dependent rect. 15 12
254 114.73 precipitation 1e-01 1440 > th dose dependent rect. 1 17
276 114.86 precipitation 1e-01 1440 > th dose independent rect. 15 12
291 114.97 precipitation 1e-01 1440 > th dose independent sin 19 NA
314 115.07 precipitation 1e-01 1440 < th dose independent sin 19 NA
316 115.07 precipitation 1e-01 1440 < th dose dependent sin 19 NA
318 115.07 precipitation 1e-01 1440 > th dose dependent rect. 20 22
329 115.14 wind 9e+00 14400 > th dose independent rect. 20 1
351 115.25 wind 9e+00 14400 < th dose independent rect. 20 1
360 115.29 precipitation 1e-01 1440 > th dose independent rect. 10 16
405 115.49 precipitation 1e-01 1440 > th dose independent rect. 8 17
412 115.50 precipitation 1e-01 1440 > th dose independent rect. 8 14
431 115.53 precipitation 1e-01 1440 < th dose independent rect. 9 17
433 115.53 precipitation 1e-01 1440 < th dose dependent rect. 9 17
474 115.69 wind 9e+00 14400 > th dose dependent rect. 19 10
480 115.71 wind 9e+00 14400 > th dose dependent rect. 19 6
496 115.75 wind 9e+00 4320 > th dose dependent rect. 16 2
550 115.90 wind 9e+00 14400 > th dose independent rect. 19 6
599 116.02 wind 9e+00 14400 > th dose independent rect. 19 9
603 116.03 humidity 7e+01 4320 > th dose dependent rect. 18 1
651 116.21 wind 9e+00 14400 < th dose independent rect. 19 6
674 116.25 temperature 1e+01 10 > th dose dependent rect. 11 23
706 116.34 wind 9e+00 14400 < th dose independent rect. 19 9
714 116.36 precipitation 1e-01 43200 < th dose independent rect. 17 1
715 116.36 precipitation 1e-01 43200 < th dose dependent rect. 17 1
728 116.39 wind 9e+00 14400 < th dose independent rect. 20 12
763 116.48 precipitation 1e-01 43200 > th dose independent rect. 17 1
827 116.64 precipitation 1e-01 43200 > th dose dependent rect. 17 1
901 116.86 humidity 8e+01 4320 < th dose independent rect. 17 3
904 116.87 wind 9e+00 4320 > th dose independent rect. 17 1
913 116.91 wind 9e+00 4320 < th dose independent rect. 17 1
914 116.91 humidity 8e+01 4320 > th dose dependent rect. 21 1
938 116.99 humidity 9e+01 14400 > th dose independent rect. 21 1
946 117.00 humidity 8e+01 4320 > th dose dependent rect. 18 4
970 117.07 atmosphere 1e+03 14400 < th dose independent rect. 12 1
995 117.16 humidity 5e+01 4320 > th dose dependent rect. 21 1