BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0536300 Os04g0536300|AK070205
(266 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0536300 Similar to Yabby15 protein (Fragment) 399 e-111
Os02g0643200 YABBY protein family protein 259 1e-69
Os10g0508300 YABBY protein family protein 181 5e-46
Os12g0621100 Similar to Filamentous flower-like yabby prote... 142 3e-34
Os03g0215200 Drooping leaf protein 110 1e-24
Os03g0650000 Similar to Yabby9 protein 105 4e-23
Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower pro... 101 6e-22
>Os04g0536300 Similar to Yabby15 protein (Fragment)
Length = 266
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/266 (75%), Positives = 201/266 (75%)
Query: 1 MMSSAPETFSLDXXXXXXXXXXXXXXXXXXXCYVHCNFCDTILAVGVPCSSLFKTVTVRC 60
MMSSAPETFSLD CYVHCNFCDTILAVGVPCSSLFKTVTVRC
Sbjct: 1 MMSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRC 60
Query: 61 GHCANXXXXXXXXXXXPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQXX 120
GHCAN PAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQ
Sbjct: 61 GHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQAS 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRF 180
MASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRF
Sbjct: 121 PNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRF 180
Query: 181 IKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKTGIQSQDGAGECML 240
IKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKTGIQSQDGAGECML
Sbjct: 181 IKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKTGIQSQDGAGECML 240
Query: 241 FKDGLYXXXXXXXXXXXXSSMGVTPF 266
FKDGLY SSMGVTPF
Sbjct: 241 FKDGLYAAAAAAAAATAASSMGVTPF 266
>Os02g0643200 YABBY protein family protein
Length = 256
Score = 259 bits (662), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/237 (62%), Positives = 159/237 (67%), Gaps = 8/237 (3%)
Query: 32 CYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANXXXXXXX-XXXXPAAASTANQLPFGQ 90
CYVHCN CDTILAVGVPCSSLFKTVTVRCGHCAN A + ANQL FG
Sbjct: 26 CYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGP 85
Query: 91 ALLSPTSPHGLLDEVPSFQAPASLMTEQXXXXXXXXXXXXXXXXXXXXXXXMASAANKAT 150
+LLSPTSPHGLLDEV +FQ P SL+ EQ M K
Sbjct: 86 SLLSPTSPHGLLDEV-AFQTP-SLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPV 143
Query: 151 QREPQQPKNAP-SANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWA 209
Q+EP+ PKNAP SANR EKRQRVPSAYNRFIKDEIQRIKA NPDI+HREAFSAAAKNWA
Sbjct: 144 QQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWA 203
Query: 210 HFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLYXXXXXXXXXXXXSSMGVTPF 266
HFPHIHFGLMPDQG KKT + QDG+ E +L KD LY ++MGVTPF
Sbjct: 204 HFPHIHFGLMPDQGFKKT-FKPQDGS-EDILLKDSLY--AAAAAAAAAAANMGVTPF 256
>Os10g0508300 YABBY protein family protein
Length = 348
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 143/291 (49%), Gaps = 59/291 (20%)
Query: 32 CYVHCNFCDTILAVG-----------------------------------VPCSSLFKTV 56
CYVHC++CDT+L V VP SSLF+TV
Sbjct: 61 CYVHCHYCDTVLVVSDLRSNHAHFLSICVHLALDSRAFLVHPWRRVLQVSVPSSSLFETV 120
Query: 57 TVRCGHCANXXXXXXXXXXXPAAASTANQLP-------------FGQAL-LSPTSP---H 99
TVRCGHC++ P A+ A P F +L L+P +P H
Sbjct: 121 TVRCGHCSSLLTVNMRGLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHSLNLAPANPPHHH 180
Query: 100 GLLDEVPSFQAPASLMTEQXXXXXXXXXXXX---XXXXXXXXXXXMASAANKATQREPQQ 156
LLDE+ + +P L+ EQ ++ KA +EP
Sbjct: 181 SLLDEISTANSPTQLLLEQHGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSP 240
Query: 157 PKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHF 216
N NR EKRQRVPSAYNRFIKDEIQRIKA NPDI+HREAFSAAAKNWAHFPHIHF
Sbjct: 241 RTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 300
Query: 217 GLMPD-QGLKKTGIQSQDGAGECMLFKDGLYXXXXXXXXXXXXSSMGVTPF 266
GLMPD QGLKKT + QD + L K+GLY ++MGV P+
Sbjct: 301 GLMPDHQGLKKTSLLPQDHQRKDGLLKEGLY---AAAAAAAAAANMGVAPY 348
>Os12g0621100 Similar to Filamentous flower-like yabby protein (Fragment)
Length = 207
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 108/203 (53%), Gaps = 36/203 (17%)
Query: 32 CYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANXXXXXXXXXXXPAAASTANQLPFGQA 91
CYVHCNFC+TILAV VP +S+ VTVRCGHC N
Sbjct: 12 CYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTN-------------------------- 45
Query: 92 LLSPTSPHGLLDEVPSFQAPASLMTEQXXXXXXXXXXXXXXXXXXXXXXXM-------AS 144
LLS + GL+ P+ Q ++ A+
Sbjct: 46 LLS-VNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAA 104
Query: 145 AANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAA 204
AA + ++ QQ + A A R EKRQRVPSAYNRFIK+EI+RIKA+NPDI+HREAFS A
Sbjct: 105 AAMVSYSQQNQQLEQALHA-RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTA 163
Query: 205 AKNWAHFPHIHFGLMPD-QGLKK 226
AKNWAH+P+IHFGL P +G KK
Sbjct: 164 AKNWAHYPNIHFGLSPGHEGGKK 186
>Os03g0215200 Drooping leaf protein
Length = 194
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 87/178 (48%), Gaps = 44/178 (24%)
Query: 32 CYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANXXXXXXXXXXXPAAASTANQLPFGQA 91
CYV C +C+T+LAVGVPC L TVTV+CGHC N + + + P Q
Sbjct: 11 CYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNN-------------LSFLSPRPPMVQP 57
Query: 92 LLSPTSPHGLLDEVPSFQAPASLMTEQXXXXXXXXXXXXXXXXXXXXXXXMASAANKATQ 151
L P G FQ P + ++ +N+ +
Sbjct: 58 LSPTDHPLG------PFQGPCTDCRRNQPLPL------------------VSPTSNEGSP 93
Query: 152 REPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWA 209
R AP + EK+ R+PSAYNRF+++EIQRIKA+ PDI HREAFS AAKNWA
Sbjct: 94 R-------APFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>Os03g0650000 Similar to Yabby9 protein
Length = 186
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 54/62 (87%)
Query: 165 RTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGL 224
R EKRQRVPSAYNRFIK+EI+RIKA+NPDI+HREAFS AAKNWAHFP+IHFGL +
Sbjct: 108 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESS 167
Query: 225 KK 226
KK
Sbjct: 168 KK 169
>Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower protein 1)
Length = 169
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/54 (83%), Positives = 49/54 (90%)
Query: 165 RTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 218
R EKRQRVPSAYNRFIK+EIQRIK SNP+I+HREAFSAAAKNWAH P +HFGL
Sbjct: 104 RPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.129 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,956,560
Number of extensions: 230471
Number of successful extensions: 632
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 7
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)