Os07g0160100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : YABBY protein (OsYAB1) (Filamentous flower protein 1).
FiT-DB / Search/ Help/ Sample detail
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Os07g0160100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : YABBY protein (OsYAB1) (Filamentous flower protein 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 305.99 | 0.822 | 8.1 | -5.3 | 0.992 | 4.43 | -0.605 | 0.862 | -0.883 | 22.5 | 16.1 | 5488 | -- | -- |
| 306.33 | 0.815 | 8.15 | -5.4 | 0.968 | 4.25 | -0.585 | -- | -0.937 | 22.5 | 17.02 | 5480 | -- | -- |
| 307.41 | 0.817 | 8.11 | -5.27 | 0.991 | 4.35 | -- | 0.74 | -0.875 | 22.6 | 16.4 | 5482 | -- | -- |
| 307.54 | 0.817 | 8.14 | -5.44 | 0.989 | 4.26 | -- | -- | -0.936 | 22.6 | 16.89 | 5480 | -- | -- |
| 344.92 | 0.865 | 8.09 | -4.85 | -- | 4.53 | -- | -0.0608 | -0.872 | -- | 16.72 | 2370 | -- | -- |
| 711.29 | 1.25 | 7.91 | -3.25 | 1.2 | -- | -0.217 | -- | 0.0677 | 23.2 | -- | -- | -- | -- |
| 711.48 | 1.25 | 7.91 | -3.24 | 1.2 | -- | -- | -- | 0.0683 | 23.2 | -- | -- | -- | -- |
| 333.09 | 0.85 | 8.07 | -4.57 | -- | 3.83 | -- | -- | -0.733 | -- | 21.92 | 2338 | -- | -- |
| 786.91 | 1.31 | 7.89 | -- | 0.622 | 2.59 | -- | -- | 0.000234 | 22.7 | 22.3 | 1068 | -- | -- |
| 800.94 | 1.32 | 7.88 | -3.21 | -- | -- | -- | -- | 0.0789 | -- | -- | -- | -- | -- |
| 988.01 | 1.47 | 7.83 | -- | 1.17 | -- | -- | -- | 0.429 | 23 | -- | -- | -- | -- |
| 802.17 | 1.32 | 7.87 | -- | -- | 2.85 | -- | -- | 0.147 | -- | 24.06 | 1001 | -- | -- |
| 1072.75 | 1.53 | 7.8 | -- | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 304.76 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 3 | 305.45 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 8 | 306.10 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 9 | 306.10 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 39 | 309.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 43 | 310.23 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 46 | 310.60 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 58 | 314.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 60 | 314.72 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 76 | 314.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 80 | 315.15 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 84 | 315.33 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 22 |
| 88 | 315.43 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 20 |
| 116 | 315.96 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 21 |
| 122 | 315.99 | temperature | 15 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 132 | 316.11 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 152 | 316.21 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 161 | 316.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 192 | 316.57 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 224 | 316.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 246 | 316.87 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 4 |
| 304 | 317.27 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 357 | 317.56 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 8 |
| 359 | 317.57 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 365 | 317.62 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 10 |
| 470 | 318.13 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 471 | 318.13 | temperature | 15 | 4320 | > th | dose dependent | sin | 5 | NA |
| 542 | 318.48 | temperature | 20 | 4320 | > th | dose dependent | sin | 18 | NA |
| 551 | 318.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 565 | 318.58 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 566 | 318.58 | temperature | 15 | 4320 | > th | dose dependent | rect. | 13 | 14 |
| 621 | 318.80 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 742 | 319.43 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 13 |
| 780 | 319.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 823 | 319.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 870 | 319.87 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 956 | 320.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 16 | 19 |