BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0160100 Os07g0160100|AF098752
(169 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08465.1 | chr1:2676033-2679382 FORWARD LENGTH=185 171 2e-43
AT2G26580.1 | chr2:11303923-11306739 REVERSE LENGTH=165 157 3e-39
AT2G45190.1 | chr2:18628450-18630552 REVERSE LENGTH=230 145 1e-35
AT4G00180.1 | chr4:72804-75089 REVERSE LENGTH=241 131 2e-31
AT1G69180.1 | chr1:26007734-26008940 REVERSE LENGTH=182 120 2e-28
AT1G23420.1 | chr1:8317423-8319104 FORWARD LENGTH=232 117 3e-27
>AT1G08465.1 | chr1:2676033-2679382 FORWARD LENGTH=185
Length = 184
Score = 171 bits (432), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 109/162 (67%), Gaps = 3/162 (1%)
Query: 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLA-PFHQARTV 59
MSV F+SE VCYV+C++C TIL V+VP + +VTVRCGHCT +LS+++ HQ
Sbjct: 1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAP 60
Query: 60 QDHQ--VQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYN 117
HQ +R + D AS ++ T+ + ++ PIRPPEKRQRVPSAYN
Sbjct: 61 PIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPIRPPEKRQRVPSAYN 120
Query: 118 RFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSV 159
RFIKEEIQRIK NPEISHREAFS AAKNWAH P +HFGL +
Sbjct: 121 RFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKL 162
>AT2G26580.1 | chr2:11303923-11306739 REVERSE LENGTH=165
Length = 164
Score = 157 bits (396), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 102/155 (65%), Gaps = 9/155 (5%)
Query: 5 FTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQV 64
+E +CY+ CN+CN IL VNVP + ++IVTVRCGHCT + S+++A Q+ +
Sbjct: 6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS-------L 58
Query: 65 QNRGFQGNNFG--SYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKE 122
FQ N+ Y +SR+ + T +Q RPPEKRQRVPSAYN+FIKE
Sbjct: 59 SRPNFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQRVPSAYNQFIKE 118
Query: 123 EIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157
EIQRIK +NP+ISHREAFS AAKNWAH P +HFGL
Sbjct: 119 EIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 153
>AT2G45190.1 | chr2:18628450-18630552 REVERSE LENGTH=230
Length = 229
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 101/171 (59%), Gaps = 23/171 (13%)
Query: 7 SEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQN 66
S+H+CYV CN+C TIL VNVP + VTVRCG CT +LS+++ + + +Q+Q
Sbjct: 22 SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPAS---NQLQL 78
Query: 67 RGFQGNNFGSYDI-------ASRNQRTSTAMYP--------MPTSQQQVSPI-----RPP 106
+ + F DI S +P M QQ P RPP
Sbjct: 79 QLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPP 138
Query: 107 EKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157
EKRQRVPSAYNRFIKEEIQRIK NP+ISHREAFSAAAKNWAH P +HFGL
Sbjct: 139 EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 189
>AT4G00180.1 | chr4:72804-75089 REVERSE LENGTH=241
Length = 240
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 103/188 (54%), Gaps = 43/188 (22%)
Query: 6 TSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQ 65
+++ +CYV+C++C+T+L V+VP + + VTVRCGHC+ +LS+ ++ R + V
Sbjct: 21 STDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVS----MRALLLPSVS 76
Query: 66 NRG---------------FQGNNFGSYDI---------------------ASRNQRTSTA 89
N G + G +I A+RN R+
Sbjct: 77 NLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDH 136
Query: 90 MYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAH 149
+ MP P EKRQRVPSAYNRFIKEEIQRIK NP+ISHREAFSAAAKNWAH
Sbjct: 137 LQEMPRPPPANRPP---EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAH 193
Query: 150 LPRLHFGL 157
P +HFGL
Sbjct: 194 FPHIHFGL 201
>AT1G69180.1 | chr1:26007734-26008940 REVERSE LENGTH=182
Length = 181
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Query: 7 SEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQN 66
+EH+ YV C+ CNTIL V +P + VTV+CGHC + + P Q Q+Q+
Sbjct: 18 AEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQGHVSLTLQMQS 77
Query: 67 RGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQR 126
F G++ Y S + +S+ P S ++PPEK+QR+PSAYNRF+++EIQR
Sbjct: 78 --FGGSD---YKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYNRFMRDEIQR 132
Query: 127 IKTSNPEISHREAFSAAAKNWA 148
IK++NPEI HREAFSAAAKNWA
Sbjct: 133 IKSANPEIPHREAFSAAAKNWA 154
>AT1G23420.1 | chr1:8317423-8319104 FORWARD LENGTH=232
Length = 231
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 21/170 (12%)
Query: 10 VCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDL--APF----------HQAR 57
+C+V C +C TIL+V+VP +VTVRCGHCT +LS++L A F H
Sbjct: 21 ICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLDE 80
Query: 58 TVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQ-VSPI-----RPPEKRQR 111
T ++ G + ++ + + + T + ++ + VS + +PPEKRQR
Sbjct: 81 TGKEEVAATDGVEEE---AWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQR 137
Query: 112 VPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVAD 161
PSAYN FIKEEI+R+K NP ++H+EAFS AAKNWAH P H + +D
Sbjct: 138 APSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNKRAASD 187
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.130 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,580,901
Number of extensions: 135906
Number of successful extensions: 490
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 7
Length of query: 169
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 78
Effective length of database: 8,611,713
Effective search space: 671713614
Effective search space used: 671713614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)