BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0160100 Os07g0160100|AF098752
(169 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower pro... 340 2e-94
Os03g0650000 Similar to Yabby9 protein 175 2e-44
Os12g0621100 Similar to Filamentous flower-like yabby prote... 163 6e-41
Os02g0643200 YABBY protein family protein 138 2e-33
Os04g0536300 Similar to Yabby15 protein (Fragment) 138 2e-33
Os03g0215200 Drooping leaf protein 120 4e-28
Os10g0508300 YABBY protein family protein 107 5e-24
>Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower protein 1)
Length = 169
Score = 340 bits (873), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/169 (96%), Positives = 163/169 (96%)
Query: 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQ 60
MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQ
Sbjct: 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQ 60
Query: 61 DHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFI 120
DHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFI
Sbjct: 61 DHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFI 120
Query: 121 KEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVADXXXXXXSN 169
KEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVAD SN
Sbjct: 121 KEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVADGGGGGGSN 169
>Os03g0650000 Similar to Yabby9 protein
Length = 186
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 114/168 (67%), Gaps = 16/168 (9%)
Query: 1 MSVQFTS--EHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQART 58
MS Q EHVCYV+CN+CNTI V+VP+N NIVTVRCGHCT +LS++L QA
Sbjct: 1 MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALP 60
Query: 59 VQDH-----QVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQ---QQVSPIRPPEKRQ 110
+DH ++ N F+ N+ Y +SR R PM S+ + + +RPPEKRQ
Sbjct: 61 AEDHLQDNLKMHNMSFR-ENYSEYGSSSRYGRV-----PMMFSKNDTEHMLHVRPPEKRQ 114
Query: 111 RVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLS 158
RVPSAYNRFIKEEI+RIK +NP+ISHREAFS AAKNWAH P +HFGL
Sbjct: 115 RVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLG 162
>Os12g0621100 Similar to Filamentous flower-like yabby protein (Fragment)
Length = 207
Score = 163 bits (412), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 114/178 (64%), Gaps = 20/178 (11%)
Query: 1 MSVQFT-SEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDL-APFHQART 58
MS Q +E VCYV+CN+CNTIL V+VP N NIVTVRCGHCT +LS++L H A
Sbjct: 1 MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPA 60
Query: 59 VQDHQ---VQNRGFQG-----NNFGSYDIASRNQRTSTAMYPMPT-----SQQ-----QV 100
+QDH +Q G G + + + ++ + + + P SQQ Q
Sbjct: 61 LQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQA 120
Query: 101 SPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLS 158
RPPEKRQRVPSAYNRFIKEEI+RIK +NP+ISHREAFS AAKNWAH P +HFGLS
Sbjct: 121 LHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLS 178
>Os02g0643200 YABBY protein family protein
Length = 256
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 100/191 (52%), Gaps = 40/191 (20%)
Query: 7 SEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDL---------------- 50
+E +CYV+CN C+TIL V VP + + VTVRCGHC +LS++L
Sbjct: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQL 81
Query: 51 --APFHQARTVQDHQVQNRGFQGNNFGSYDIAS--------------RNQRTSTAMYPMP 94
P + T + FQ + AS + + M P
Sbjct: 82 HFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAK 141
Query: 95 TSQQQ--------VSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKN 146
QQ+ S RPPEKRQRVPSAYNRFIK+EIQRIK NP+ISHREAFSAAAKN
Sbjct: 142 PVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 201
Query: 147 WAHLPRLHFGL 157
WAH P +HFGL
Sbjct: 202 WAHFPHIHFGL 212
>Os04g0536300 Similar to Yabby15 protein (Fragment)
Length = 266
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 102/190 (53%), Gaps = 40/190 (21%)
Query: 8 EHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDL--------------APF 53
E +CYV+CN+C+TIL V VP + + VTVRCGHC +LS++L PF
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 54 HQA--RTVQDHQVQNR--GFQGNNFGSYDIAS-------------RNQRTSTAMYPMPTS 96
QA H + + FQ + AS N +T+M
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 97 QQQVSPIRPP---------EKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNW 147
Q P +P EKRQRVPSAYNRFIK+EIQRIK SNP+I+HREAFSAAAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 148 AHLPRLHFGL 157
AH P +HFGL
Sbjct: 209 AHFPHIHFGL 218
>Os03g0215200 Drooping leaf protein
Length = 194
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 87/154 (56%), Gaps = 16/154 (10%)
Query: 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCT-MVLSMDLAPFHQARTV 59
M + SEH+CYV C YCNT+L V VP + VTV+CGHC + P Q +
Sbjct: 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP 60
Query: 60 QDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSP-----IRPPEKRQRVPS 114
DH + G G RNQ PTS + SP ++PPEK+ R+PS
Sbjct: 61 TDHPL------GPFQGPCTDCRRNQPLPLVS---PTSNEG-SPRAPFVVKPPEKKHRLPS 110
Query: 115 AYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWA 148
AYNRF++EEIQRIK + P+I HREAFS AAKNWA
Sbjct: 111 AYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>Os10g0508300 YABBY protein family protein
Length = 348
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 83 NQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSA 142
+Q + A P P + V RPPEKRQRVPSAYNRFIK+EIQRIK NP+ISHREAFSA
Sbjct: 229 SQGKAAAKEPSPRTNTAVIN-RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSA 287
Query: 143 AAKNWAHLPRLHFGL 157
AAKNWAH P +HFGL
Sbjct: 288 AAKNWAHFPHIHFGL 302
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.130 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,612,535
Number of extensions: 216118
Number of successful extensions: 797
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 7
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)