BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0508300 Os10g0508300|Os10g0508300
(348 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45190.1 | chr2:18628450-18630552 REVERSE LENGTH=230 149 3e-36
AT4G00180.1 | chr4:72804-75089 REVERSE LENGTH=241 128 6e-30
AT2G26580.1 | chr2:11303923-11306739 REVERSE LENGTH=165 120 9e-28
AT1G08465.1 | chr1:2676033-2679382 FORWARD LENGTH=185 115 4e-26
AT1G23420.1 | chr1:8317423-8319104 FORWARD LENGTH=232 91 7e-19
AT1G69180.1 | chr1:26007734-26008940 REVERSE LENGTH=182 87 2e-17
>AT2G45190.1 | chr2:18628450-18630552 REVERSE LENGTH=230
Length = 229
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 82/102 (80%), Gaps = 6/102 (5%)
Query: 247 INRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDH 306
+NRPPEKRQRVPSAYNRFIK+EIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL+PD+
Sbjct: 134 VNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDN 193
Query: 307 QGLKKTSLLPQDHQRKDGLLKEGLYXXXXXXXXXXNMGVAPY 348
Q +KKT+ +PQ + ++KEG Y N+GV PY
Sbjct: 194 QPVKKTN-MPQQEGEDNMVMKEGFY-----APAAANVGVTPY 229
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 35/86 (40%)
Query: 55 SEQEQLCYVHCHYCDTVLVVSDLRSNHAHFLSICVHLALDSRAFLVHPWRRVLQVSVPSS 114
S + LCYV C++C T+L V+ VP +
Sbjct: 20 SPSDHLCYVQCNFCQTILAVN-----------------------------------VPYT 44
Query: 115 SLFETVTVRCGHCSSLLTVNMRGLLL 140
SLF+TVTVRCG C++LL+VNMR +L
Sbjct: 45 SLFKTVTVRCGCCTNLLSVNMRSYVL 70
>AT4G00180.1 | chr4:72804-75089 REVERSE LENGTH=241
Length = 240
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 74/96 (77%), Gaps = 9/96 (9%)
Query: 252 EKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQGLKK 311
EKRQRVPSAYNRFIK+EIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM DH KK
Sbjct: 151 EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKK 210
Query: 312 TSLLPQDHQRKDGLL-KEGLYXXXXXXXXXXNMGVA 346
++ Q+ + DG++ +EG Y N+GVA
Sbjct: 211 ANVRQQEGE--DGMMGREGFY------GSAANVGVA 238
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 45/88 (51%), Gaps = 37/88 (42%)
Query: 55 SEQEQLCYVHCHYCDTVLVVSDLRSNHAHFLSICVHLALDSRAFLVHPWRRVLQVSVPSS 114
S +QLCYVHC +CDTVL VS VP S
Sbjct: 20 SSTDQLCYVHCSFCDTVLAVS-----------------------------------VPPS 44
Query: 115 SLFETVTVRCGHCSSLL--TVNMRGLLL 140
SLF+TVTVRCGHCS+LL TV+MR LLL
Sbjct: 45 SLFKTVTVRCGHCSNLLSVTVSMRALLL 72
>AT2G26580.1 | chr2:11303923-11306739 REVERSE LENGTH=165
Length = 164
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 57/62 (91%)
Query: 242 TNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFG 301
T ++NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFG
Sbjct: 93 TEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFG 152
Query: 302 LM 303
LM
Sbjct: 153 LM 154
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 35/82 (42%)
Query: 58 EQLCYVHCHYCDTVLVVSDLRSNHAHFLSICVHLALDSRAFLVHPWRRVLQVSVPSSSLF 117
EQLCY+ C++C+ +L V+ VP SSLF
Sbjct: 9 EQLCYIPCNFCNIILAVN-----------------------------------VPCSSLF 33
Query: 118 ETVTVRCGHCSSLLTVNMRGLL 139
+ VTVRCGHC++L +VNM L
Sbjct: 34 DIVTVRCGHCTNLWSVNMAAAL 55
>AT1G08465.1 | chr1:2676033-2679382 FORWARD LENGTH=185
Length = 184
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 62/78 (79%), Gaps = 4/78 (5%)
Query: 249 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQG 308
RPPEKRQRVPSAYNRFIK+EIQRIKA NP+ISHREAFS AAKNWAHFPHIHFGL D G
Sbjct: 107 RPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLD--G 164
Query: 309 LKKTSLLPQD--HQRKDG 324
KK L Q Q+ +G
Sbjct: 165 NKKGKQLDQSVAGQKSNG 182
>AT1G23420.1 | chr1:8317423-8319104 FORWARD LENGTH=232
Length = 231
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 7/90 (7%)
Query: 246 VINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD 305
V+N+PPEKRQR PSAYN FIK+EI+R+KA NP ++H+EAFS AAKNWAHFP H
Sbjct: 127 VVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNKRAAS 186
Query: 306 HQGL---KKTSLLP----QDHQRKDGLLKE 328
Q ++LP +DH+ + +E
Sbjct: 187 DQCFCEEDNNAILPCNVFEDHEESNNGFRE 216
>AT1G69180.1 | chr1:26007734-26008940 REVERSE LENGTH=182
Length = 181
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 45/49 (91%)
Query: 247 INRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 295
+ +PPEK+QR+PSAYNRF++DEIQRIK+ NP+I HREAFSAAAKNWA +
Sbjct: 108 VVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.132 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,552,787
Number of extensions: 184189
Number of successful extensions: 486
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 9
Length of query: 348
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 249
Effective length of database: 8,392,385
Effective search space: 2089703865
Effective search space used: 2089703865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)