BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0611300 Os12g0611300|J013002O04
(359 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0611300 Patatin family protein 413 e-115
Os03g0640000 Patatin family protein 218 8e-57
Os03g0784100 Patatin family protein 154 7e-38
Os07g0144500 Patatin family protein 132 3e-31
Os06g0677000 Patatin family protein 103 3e-22
Os03g0254400 Patatin family protein 89 5e-18
Os06g0285300 78 1e-14
Os06g0358600 67 3e-11
>Os12g0611300 Patatin family protein
Length = 359
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/359 (64%), Positives = 231/359 (64%)
Query: 1 MASXXXXXXXXXVDVDLGKLSYEIFSLLESNFLFXXXXXXXXXVCSLPGTPGRALLGGKV 60
MAS VDVDLGKLSYEIFSLLESNFLF VCSLPGTPGRALLGGKV
Sbjct: 1 MASPPTPQPPPPVDVDLGKLSYEIFSLLESNFLFGAGAGGGGGVCSLPGTPGRALLGGKV 60
Query: 61 RVLAIDGCGPGPGDXXXXXXXXXXXXXXXREKSXXXXXXXXXXXXXXXXXXXXXXXXXML 120
RVLAIDGCGPGPGD REKS ML
Sbjct: 61 RVLAIDGCGPGPGDALLAAAALVRLETALREKSGDGDARVADFFDAAAGAGAGGVLAAML 120
Query: 121 FLKGADGRPRYTXXXXXXXXXXSLGKXXXXXXXXXXXXXXXXXVAALFRRGSSAERSSLR 180
FLKGADGRPRYT SLGK VAALFRRGSSAERSSLR
Sbjct: 121 FLKGADGRPRYTAADALAFVAASLGKGGWRGGGGGGGGRRWWGVAALFRRGSSAERSSLR 180
Query: 181 RVFGDAHAGTTVAPLLVPCYDLATAAPFLFSRADAVESGSFDFRLRDVXXXXXXXXXXXX 240
RVFGDAHAGTTVAPLLVPCYDLATAAPFLFSRADAVESGSFDFRLRDV
Sbjct: 181 RVFGDAHAGTTVAPLLVPCYDLATAAPFLFSRADAVESGSFDFRLRDVCAATCAGGAAAT 240
Query: 241 XVRSVDGRTXXXXXXXXXXXXXNPTAAAITHVLHNKQEFPLAAGVDDLLVVXXXXXXXXX 300
VRSVDGRT NPTAAAITHVLHNKQEFPLAAGVDDLLVV
Sbjct: 241 AVRSVDGRTAIAAASGGVAAMGNPTAAAITHVLHNKQEFPLAAGVDDLLVVSIGSGSSSA 300
Query: 301 XXXXXXXXWRTPLPSRSPSPAEMVRLTAEGVADMVKKTHTHTQSQPSISNPTAPIEPRH 359
WRTPLPSRSPSPAEMVRLTAEGVADMVKKTHTHTQSQPSISNPTAPIEPRH
Sbjct: 301 ATPSTAAGWRTPLPSRSPSPAEMVRLTAEGVADMVKKTHTHTQSQPSISNPTAPIEPRH 359
>Os03g0640000 Patatin family protein
Length = 441
Score = 218 bits (554), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 148/331 (44%), Positives = 167/331 (50%), Gaps = 25/331 (7%)
Query: 15 VDLGKLSYEIFSLLESNFLFXXXXXXXXXVCSLPGTPGRALLG------GKVRVLAIDGC 68
+D KLSYEIFSLLES FLF + S P TP R LG G+VRVLAIDGC
Sbjct: 8 MDADKLSYEIFSLLESKFLFGAGGGGC--LSSGPCTPARPFLGGGGGMDGRVRVLAIDGC 65
Query: 69 GPGPGDXXXXXXXXXXXXXXX-REKSXXXXXXXXXXXXXXXXXXXXXXXXXMLFLKGADG 127
G R+++ MLFL+G DG
Sbjct: 66 GSSGAGDALLAAAALARLEAGLRKRTGDSDARVADFFDVAAGAGAGGVLAAMLFLRGPDG 125
Query: 128 RPRYTXXXXXXXXXXSLGKXXXXXXXXXXXXXXXXXVAALFRRGSSAERSSLRRVFGDAH 187
RPRYT S+G+ A LFR G+ S RRVFGDA
Sbjct: 126 RPRYTAEEALEFVAASVGRDWAGRRGRW---------ARLFRGGARGAERSFRRVFGDAT 176
Query: 188 AGTTVAPLLVPCYDLATAAPFLFSRADAVESGSFDFRLRDVXXXXXXXXXXXXXVRSVDG 247
TVAPLLVPCYDLATAAPF+FSRADAVES S+DF LRDV VRSVDG
Sbjct: 177 LKDTVAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVCAATCAAGSTAAAVRSVDG 236
Query: 248 RTXXXXXXXXXXXXXNPTAAAITHVLHNKQEFPLAAGVDDLLVVXXXXXXXXXXXXXXXX 307
RT NP AAAITHVLHNKQEFPLA VDD+LV+
Sbjct: 237 RTAIAAASGGVAAMGNPAAAAITHVLHNKQEFPLATTVDDILVLSIGTGASTSATA---- 292
Query: 308 XWRTPLPSRSPSPAEMVRLTAEGVADMVKKT 338
TP+P+RSPSP EM R+TAEGVADMV ++
Sbjct: 293 ---TPMPTRSPSPREMARVTAEGVADMVDES 320
>Os03g0784100 Patatin family protein
Length = 462
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 160/364 (43%), Gaps = 42/364 (11%)
Query: 15 VDLGKLSYEIFSLLESNFLFXXXXXXXXXVCSLPGTPGRALLG-----------GKVRVL 63
+D+ KL+YEIFS+LES FLF V S P A+ G GKV VL
Sbjct: 12 LDVDKLTYEIFSILESKFLFGYDDPKL--VFSGGDEPQGAVKGTLARGPAVVERGKVCVL 69
Query: 64 AIDGCGPGPGDXXXXXXXXXXXXXXXREKSXXXXXXXXXXXXXXXXXXXXXXXXXMLFLK 123
+IDG G D R ++ ML +
Sbjct: 70 SIDGGGRAA-DGLLAGAALVSLEASLRRRTGDETARLADFFDVAAGSGAGGVLAAMLVAR 128
Query: 124 GADGRPRYTXXXXXXXXXXSLGKXXXXXXXXXXXXXXXXXVAALFRRGSSAERSSLRRVF 183
G DGRP ++ SL + + ALFRR +A R+VF
Sbjct: 129 GGDGRPMFSAEDALAFLMRSLRRGWSGGGGGGAAGG----IRALFRRPGAA----FRKVF 180
Query: 184 GDAHAGTTVAPLLVPCYDLATAAPFLFSRADAVESGSFDFRLRDVXXXX---XXXXXXXX 240
GD TV P+LVPCYDLA+A PFLFSRADAVE+ ++DFRLRDV
Sbjct: 181 GDLTLRDTVRPVLVPCYDLASAGPFLFSRADAVETAAYDFRLRDVCAATCAGSDGSASAV 240
Query: 241 XVRSVDGRTXXXXXXXXXXXXXNPTAAAITHVLHNKQEFPLAAGVDDLLVVXXXXXXXXX 300
VRS DG T NPTAAAITHVL+NK+EFPLAAGV+DLLV+
Sbjct: 241 EVRSSDGAT-RIAAVGGGLALGNPTAAAITHVLNNKREFPLAAGVEDLLVISIGSGECD- 298
Query: 301 XXXXXXXXWRTPLPSRSPSPAEMVRLTAEGVADMVKKT------HTHTQSQPSISNPTAP 354
P + S +E+VR+ AEGVADMV + H T + I +P
Sbjct: 299 ---------NRPTGGAAASTSEIVRIAAEGVADMVDQAVAMAFGHNRTNNYIRIQAMGSP 349
Query: 355 IEPR 358
R
Sbjct: 350 RASR 353
>Os07g0144500 Patatin family protein
Length = 413
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 141/334 (42%), Gaps = 31/334 (9%)
Query: 19 KLSYEIFSLLESNFLFXXXXXXXXXVCSLPGTPGRALLGGKVRVLAIDGCGPGPGDXXXX 78
+L+YEIFS+LES FLF SL P + G +V VL++DG G P D
Sbjct: 11 RLTYEIFSILESKFLFGYGGGGGGETKSLQCAPPVS-RGNRVCVLSVDG-GARPEDGLLA 68
Query: 79 XXXXXXXXXXXREKSXXXXXXXXXXXXXXXXXXXXXXXXXMLFLKGADGRPRYTXXXXXX 138
+ ++ MLF +G GRP Y+
Sbjct: 69 AAALVRLEAAVQRRAGSKAARLADFFDVAAGSGAGGVLAAMLFARGPCGRPMYSADDALG 128
Query: 139 XXXXSLGKXXXXXXXXXXXXXXXXXVAALFRRGSSAERSSLRRVFGDAHAGTTVAPLLVP 198
+ + L RR + A +VFG+ TV P+LVP
Sbjct: 129 FLLRRVRR-----------RGWSSRAGGLLRRPAGA----FHKVFGELTLRDTVRPVLVP 173
Query: 199 CYDLATAAPFLFSRADAVESGSFDFRLRDVXXXXXXXXXXXXXVR--SVDGRTXXXXXXX 256
CYDLAT APFLFSRADA +S ++DFRLRD V SVDG T
Sbjct: 174 CYDLATRAPFLFSRADAAQSPAYDFRLRDACAATCAPSGGGAAVEASSVDGVT-RITAVG 232
Query: 257 XXXXXXNPTAAAITHVLHNKQEFPLAAGVDDLLVVXXXXXXXXXXXXXXXXXWRTPLPSR 316
NPTAAAITHVL+N++EFP AAGVD+LLV+ RTP+
Sbjct: 233 SGVALGNPTAAAITHVLNNRREFPAAAGVDNLLVISIGTGEAAGSSSRHRA--RTPV--- 287
Query: 317 SPSPAEMVRLTAEGVADMVKKTHTHTQSQPSISN 350
+ R+ AEG +DMV + Q SN
Sbjct: 288 ------IARIAAEGASDMVDQAVAMAFGQHRTSN 315
>Os06g0677000 Patatin family protein
Length = 450
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 177 SSLRRVFGDAHAGTTVAPLLVPCYDLATAAPFLFSRADAVESGSFDFRLRDVXXXXXXXX 236
S ++VFGD PLL+PCYD+ATAAPF+FSRADAVE+ +FDF L V
Sbjct: 193 SVFKKVFGDLTVRDAAKPLLIPCYDMATAAPFVFSRADAVEADAFDFPLWQV--CAAACG 250
Query: 237 XXXXXVRSVDGRT--XXXXXXXXXXXXXNPTAAAITHVLHNKQEFPLAAGVDDLLVV 291
V S+DGRT NP A A+THVLHNK+EFP AAG DL+V+
Sbjct: 251 VGPAEVASLDGRTRLRAAAATGGGGAVSNPAAVAVTHVLHNKREFPFAAGAGDLVVL 307
>Os03g0254400 Patatin family protein
Length = 469
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 191 TVAPLLVPCYDLATAAPFLFSRADAVESGSFDFRLRDVXXXXXXXXXXX--XXVRSVDGR 248
T+ P+L+ CYDL ++AP +FSRADA+ES S+DFRL +V V SVDG
Sbjct: 205 TIKPVLISCYDLKSSAPLVFSRADALESESYDFRLCEVGRAAWSEAGRFEPAEVASVDGA 264
Query: 249 TXXXXXXXXXXXXXNPTAAAITHVLHNKQEFPLAAGVDDLLVV 291
T +P AAAITHVLHNK EFP GV+DLLV+
Sbjct: 265 T-SCAAVDGGPIMGSPAAAAITHVLHNKHEFPFVRGVEDLLVL 306
>Os06g0285300
Length = 180
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 164 VAALFRRGSSAERSSLRRVFGDAHAGTTVAPLLVPCYDLATAAPFLFSRADAVESGSFDF 223
VA LFR+GS AE SS+R VF DA L +PC DLA AA FLFS AD+VES SF F
Sbjct: 60 VAVLFRQGS-AEWSSIRWVFRDA------TLLFIPCNDLAIAALFLFSHADSVESASFHF 112
Query: 224 RLRD-VXXXXXXXXXXXXXVRSVDGRTXXXXXXXXXXXXXNPTAAA-ITHVLHNKQEF 279
RL D V SVD RT A A ITH+LH+KQ+
Sbjct: 113 RLHDFCMGTCLGGATTTAAVGSVDDRTTIAAASGSVAVMGYSIATAIITHMLHSKQDL 170
>Os06g0358600
Length = 167
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 40/63 (63%), Gaps = 8/63 (12%)
Query: 169 RRGSSAERSSLRRVFGDAHAGTTVAPLLVPCYDLATAAPFLFSRADAV--------ESGS 220
RR AERSSLRRVFG TVAPLLVPCYDLATAA FL SRA AV S
Sbjct: 103 RRRWVAERSSLRRVFGTVTLRDTVAPLLVPCYDLATAASFLLSRAGAVPLLPRQRRREDS 162
Query: 221 FDF 223
FDF
Sbjct: 163 FDF 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,122,059
Number of extensions: 252546
Number of successful extensions: 611
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 8
Length of query: 359
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 257
Effective length of database: 11,709,973
Effective search space: 3009463061
Effective search space used: 3009463061
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)