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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0640000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Patatin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.0355) R2 : 0.306
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.748 (0.0918) R2dC : 0.102 R2C : 0.0804
β3 : 2.33 (0.214) R2dE : 0.198 R2E : 0.2
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.148 (0.0772) R2dN8 : 0.00792 R2N8 : 0.025
σ : 0.658
deviance : 199.74
__
_____
C
peak time of C : 18.6
E
wheather : temperature
threshold : 24.9
memory length : 58
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.0274
open length of G : 3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.58 0.657 3.78 -0.39 0.739 2.81 0.0114 -12.2 0.104 18.6 25.1 90 0.0303 2.21
198.85 0.657 3.78 -0.165 0.732 2.38 0.0689 -- 0.158 18.5 24.9 57 0.0665 2.5
195.58 0.651 3.78 -0.39 0.739 2.81 -- -12.2 0.104 18.6 25.1 90 0.0304 2.22
198.68 0.656 3.79 -0.205 0.748 2.36 -- -- 0.117 18.6 24.9 59 0.0243 3
223.73 0.697 3.76 -0.381 -- 2.72 -- -11.4 0.0967 -- 25.11 85 0.0167 2.68
247.29 0.737 3.73 -0.177 0.718 -- 0.0189 -- 0.372 19.8 -- -- -- --
247.3 0.736 3.73 -0.177 0.718 -- -- -- 0.372 19.8 -- -- -- --
227.47 0.702 3.76 -0.217 -- 2.25 -- -- 0.126 -- 24.9 54 0.0742 2.99
199.74 0.658 3.78 -- 0.748 2.33 -- -- 0.148 18.6 24.9 58 0.0274 3
275.27 0.775 3.71 -0.185 -- -- -- -- 0.362 -- -- -- -- --
248.12 0.737 3.72 -- 0.719 -- -- -- 0.392 19.8 -- -- -- --
228.71 0.704 3.76 -- -- 2.24 -- -- 0.15 -- 24.95 55 0.0323 3.01
276.17 0.776 3.71 -- -- -- -- -- 0.383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 196.13 temperature 25.0 90 > th dose independent rect. 24 2
2 197.14 atmosphere 1015.0 1440 < th dose independent rect. 1 1
4 198.84 radiation 20.0 4320 < th dose dependent rect. 1 1
7 199.12 temperature 25.0 90 > th dose dependent rect. 24 3
9 199.24 temperature 10.0 1440 > th dose independent rect. 1 1
12 199.24 temperature 30.0 1440 < th dose independent rect. 1 1
16 199.24 humidity 50.0 1440 > th dose independent rect. 1 1
26 199.24 atmosphere 995.0 1440 > th dose independent rect. 1 1
27 199.24 radiation 1.0 1440 < th dose independent rect. 1 1
47 199.24 temperature 10.0 1440 > th dose independent rect. 2 23
55 199.72 wind 3.0 30 < th dose dependent rect. 24 1
57 200.16 temperature 25.0 30 > th dose dependent rect. 24 1
58 200.18 wind 3.0 30 < th dose independent rect. 24 1
61 200.39 atmosphere 1005.0 30 > th dose independent rect. 24 1
64 200.50 humidity 90.0 30 < th dose independent rect. 24 1
65 200.54 atmosphere 1000.0 30 > th dose dependent rect. 24 1
73 200.90 humidity 90.0 30 < th dose dependent rect. 24 1
76 201.08 atmosphere 1010.0 30 < th dose independent rect. 24 1
77 201.09 humidity 80.0 30 > th dose independent rect. 24 1
79 201.17 wind 1.0 30 > th dose independent rect. 24 1
86 201.31 temperature 30.0 30 < th dose independent rect. 24 1
87 201.31 humidity 50.0 30 > th dose independent rect. 24 1
91 201.31 radiation 1.0 30 < th dose independent rect. 24 1
96 201.31 precipitation 0.1 30 < th dose independent rect. 24 1
97 201.31 temperature 10.0 30 > th dose independent rect. 1 23
98 201.31 radiation 1.0 30 < th dose dependent rect. 24 1
103 201.31 precipitation 0.1 30 < th dose dependent rect. 24 1
106 201.50 humidity 50.0 30 > th dose dependent rect. 24 1
116 202.75 atmosphere 1015.0 30 < th dose dependent rect. 24 1
118 203.02 wind 9.0 30 < th dose independent rect. 1 23
122 203.30 precipitation 0.1 30 < th dose independent rect. 1 23
123 203.30 precipitation 0.1 30 < th dose dependent rect. 1 23
124 203.40 temperature 30.0 30 < th dose dependent rect. 24 1
133 204.27 wind 1.0 30 > th dose dependent rect. 24 1
165 205.66 wind 9.0 1440 < th dose independent rect. 1 1
201 206.95 atmosphere 1005.0 30 > th dose dependent rect. 24 3
205 207.60 atmosphere 995.0 30 > th dose independent rect. 1 23
230 210.98 humidity 50.0 30 > th dose independent rect. 1 23
248 213.62 wind 9.0 720 < th dose dependent rect. 24 1
249 213.63 precipitation 0.1 10 < th dose independent rect. 12 12
250 213.63 precipitation 0.1 10 < th dose dependent rect. 12 12
252 213.70 precipitation 0.1 10 < th dose independent rect. 24 12
253 213.70 precipitation 0.1 10 < th dose dependent rect. 24 12
256 213.92 temperature 15.0 10 > th dose independent rect. 24 12
260 213.95 temperature 10.0 10 > th dose independent rect. 12 12
262 213.95 atmosphere 995.0 10 > th dose independent rect. 24 12
264 214.09 atmosphere 1015.0 10 < th dose independent rect. 24 12
269 214.16 wind 9.0 10 < th dose independent rect. 12 12
276 214.35 temperature 10.0 720 > th dose independent rect. 12 1
277 214.35 atmosphere 995.0 720 > th dose independent rect. 12 1
278 214.35 atmosphere 1015.0 720 < th dose independent rect. 12 1
279 214.35 temperature 10.0 720 > th dose independent rect. 13 23
281 214.37 precipitation 0.1 720 < th dose independent rect. 12 1
283 214.37 precipitation 0.1 720 < th dose dependent rect. 12 1
284 214.40 wind 1.0 720 > th dose independent rect. 12 1
285 214.46 precipitation 0.1 720 < th dose independent rect. 24 1
286 214.46 precipitation 0.1 720 < th dose dependent rect. 24 1
289 214.51 temperature 10.0 1440 > th dose independent rect. 1 12
292 214.51 temperature 10.0 1440 > th dose independent rect. 13 12
295 214.51 atmosphere 995.0 1440 > th dose independent rect. 1 12
296 214.53 precipitation 0.1 720 < th dose independent rect. 1 23
297 214.53 precipitation 0.1 720 < th dose dependent rect. 1 23
316 214.59 humidity 50.0 720 > th dose independent rect. 12 1
319 215.13 wind 9.0 30 < th dose independent rect. 24 12
320 215.16 wind 1.0 10 > th dose independent rect. 12 12
331 215.79 humidity 50.0 30 > th dose independent rect. 24 12
333 215.92 atmosphere 1005.0 30 > th dose dependent rect. 24 6
337 216.06 humidity 50.0 10 > th dose independent rect. 12 12
338 216.08 wind 9.0 720 < th dose independent rect. 12 1
341 216.19 atmosphere 1005.0 30 > th dose independent rect. 24 3
346 216.50 atmosphere 1015.0 720 < th dose independent rect. 1 8
350 216.64 temperature 30.0 10 < th dose independent rect. 24 12
380 217.17 temperature 10.0 720 > th dose independent rect. 13 8
381 217.17 temperature 10.0 720 > th dose independent rect. 21 16
382 217.17 atmosphere 995.0 720 > th dose independent rect. 21 16
384 217.32 atmosphere 995.0 10 > th dose independent rect. 12 12
388 217.76 atmosphere 1015.0 30 < th dose independent rect. 1 23
389 217.80 temperature 10.0 720 > th dose independent rect. 1 8
390 217.80 humidity 50.0 720 > th dose independent rect. 1 8
391 217.80 atmosphere 995.0 720 > th dose independent rect. 1 8
392 217.80 temperature 10.0 720 > th dose independent rect. 9 16
394 217.91 wind 9.0 720 < th dose independent rect. 1 8
402 218.48 atmosphere 1015.0 30 < th dose independent rect. 12 12
406 218.59 wind 1.0 30 > th dose independent rect. 1 23
408 218.78 radiation 40.0 720 < th dose independent rect. 1 8
411 219.11 atmosphere 995.0 720 > th dose independent rect. 13 23
416 219.35 wind 1.0 720 > th dose independent rect. 24 1
419 219.72 temperature 10.0 30 > th dose dependent rect. 1 23
435 220.40 temperature 10.0 30 > th dose dependent rect. 3 21
440 220.60 humidity 50.0 720 > th dose dependent rect. 24 1
445 220.72 atmosphere 995.0 30 > th dose dependent rect. 24 12
451 220.83 humidity 50.0 720 > th dose independent rect. 21 16
455 221.20 radiation 1.0 720 > th dose independent rect. 12 1
458 221.41 humidity 90.0 720 < th dose independent rect. 12 1
460 221.52 precipitation 0.1 720 < th dose independent rect. 1 8
461 221.52 precipitation 0.1 720 < th dose dependent rect. 1 8
464 221.64 wind 9.0 720 < th dose independent rect. 13 23
467 221.73 precipitation 0.1 720 < th dose independent rect. 21 16
468 221.73 precipitation 0.1 720 < th dose dependent rect. 21 16
470 221.79 wind 3.0 30 < th dose independent rect. 24 3
474 221.98 temperature 15.0 720 > th dose dependent rect. 3 2
484 222.42 temperature 10.0 720 > th dose dependent rect. 12 1
488 222.53 temperature 30.0 720 < th dose dependent rect. 24 1
510 223.09 humidity 90.0 30 < th dose independent rect. 24 6
513 223.13 atmosphere 995.0 720 > th dose dependent rect. 24 1
524 223.26 wind 9.0 720 < th dose independent rect. 13 8
536 223.50 atmosphere 995.0 720 > th dose independent rect. 1 23
538 223.53 atmosphere 995.0 720 > th dose dependent rect. 12 1
557 224.17 temperature 30.0 30 < th dose independent rect. 12 12
561 224.52 wind 1.0 720 > th dose dependent rect. 12 1
567 224.68 precipitation 0.1 720 < th dose independent rect. 13 23
568 224.68 precipitation 0.1 720 < th dose dependent rect. 13 23
570 224.71 temperature 20.0 720 > th dose independent rect. 3 2
571 224.73 temperature 10.0 30 > th dose dependent rect. 12 12
580 224.91 radiation 40.0 10 < th dose independent rect. 12 12
585 225.05 humidity 80.0 30 > th dose independent rect. 24 3
594 225.26 wind 7.0 30 < th dose dependent rect. 24 3
612 225.58 radiation 10.0 4320 < th dose dependent rect. 1 3
616 225.63 temperature 10.0 30 > th dose dependent rect. 6 18
629 225.79 temperature 10.0 1440 > th dose independent rect. 1 3
632 225.79 temperature 30.0 1440 < th dose independent rect. 1 3
636 225.79 humidity 50.0 1440 > th dose independent rect. 1 3
645 225.79 atmosphere 995.0 1440 > th dose independent rect. 1 3
646 225.79 radiation 1.0 1440 < th dose independent rect. 1 3
666 225.79 temperature 10.0 1440 > th dose independent rect. 4 21
679 226.01 wind 9.0 720 < th dose independent rect. 21 16
686 226.12 atmosphere 1015.0 720 < th dose independent rect. 13 8
688 226.17 wind 7.0 10 < th dose independent rect. 3 21
691 226.24 atmosphere 1005.0 30 > th dose independent rect. 24 6
692 226.25 wind 9.0 30 < th dose dependent rect. 12 12
701 226.34 wind 9.0 30 < th dose dependent rect. 24 12
718 226.59 humidity 80.0 30 > th dose independent rect. 21 3
729 226.78 precipitation 0.1 30 < th dose independent rect. 3 21
730 226.78 precipitation 0.1 30 < th dose dependent rect. 3 21
732 226.79 atmosphere 995.0 30 > th dose dependent rect. 24 21
733 226.80 atmosphere 1010.0 30 < th dose independent rect. 24 3
736 226.82 precipitation 0.1 30 < th dose independent rect. 24 3
737 226.82 precipitation 0.1 30 < th dose dependent rect. 24 3
744 226.91 temperature 30.0 30 < th dose dependent rect. 24 12
746 226.92 temperature 30.0 30 < th dose independent rect. 24 3
747 226.92 humidity 50.0 30 > th dose independent rect. 24 3
751 226.92 radiation 1.0 30 < th dose independent rect. 24 3
756 226.92 temperature 10.0 30 > th dose independent rect. 3 21
758 226.92 radiation 1.0 30 < th dose dependent rect. 24 3
779 227.16 humidity 50.0 10 > th dose independent rect. 3 21
797 227.62 atmosphere 995.0 30 > th dose dependent rect. 12 12
811 227.82 humidity 90.0 30 < th dose dependent rect. 24 6
819 227.88 precipitation 0.1 720 < th dose independent rect. 17 16
821 227.88 precipitation 0.1 720 < th dose dependent rect. 17 16
832 227.95 temperature 10.0 720 > th dose independent rect. 17 7
833 227.95 radiation 30.0 720 < th dose independent rect. 17 7
835 227.95 temperature 10.0 720 > th dose independent rect. 24 17
837 228.00 temperature 30.0 720 < th dose independent rect. 12 1
838 228.00 wind 9.0 720 < th dose independent rect. 9 16
843 228.08 temperature 10.0 720 > th dose independent rect. 5 7
844 228.08 atmosphere 995.0 720 > th dose independent rect. 5 7
845 228.08 atmosphere 1015.0 720 < th dose independent rect. 5 7
846 228.08 temperature 10.0 720 > th dose independent rect. 12 17
872 228.24 precipitation 0.1 720 < th dose independent rect. 13 8
873 228.24 precipitation 0.1 720 < th dose dependent rect. 13 8
879 228.31 temperature 20.0 720 > th dose independent rect. 1 6
884 228.34 wind 1.0 30 > th dose independent rect. 24 12
887 228.39 precipitation 0.1 720 < th dose independent rect. 17 7
888 228.39 precipitation 0.1 720 < th dose dependent rect. 17 7
903 228.52 humidity 50.0 30 > th dose dependent rect. 12 12
906 228.56 temperature 30.0 30 < th dose independent rect. 1 23
909 228.57 temperature 30.0 720 < th dose independent rect. 1 8
910 228.62 atmosphere 1015.0 720 < th dose independent rect. 3 10
913 228.64 atmosphere 1015.0 720 < th dose independent rect. 1 14
914 228.65 temperature 30.0 720 < th dose dependent rect. 24 3
938 228.82 radiation 10.0 43200 < th dose dependent rect. 22 3
947 228.90 wind 1.0 30 > th dose independent rect. 24 3
952 228.94 atmosphere 995.0 720 > th dose independent rect. 13 8
966 229.07 humidity 60.0 30 > th dose dependent rect. 21 3
970 229.11 wind 9.0 720 < th dose independent rect. 24 17
979 229.25 radiation 20.0 720 > th dose independent rect. 15 1
981 229.25 atmosphere 995.0 30 > th dose independent rect. 24 21
983 229.30 atmosphere 995.0 30 > th dose independent rect. 3 21
994 229.39 atmosphere 995.0 720 > th dose independent rect. 9 16
997 229.41 radiation 40.0 720 < th dose dependent rect. 17 7