BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0640000 Os03g0640000|Os03g0640000
(441 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39220.1 | chr2:16375055-16376663 REVERSE LENGTH=500 150 1e-36
AT3G54950.1 | chr3:20359076-20360774 REVERSE LENGTH=489 150 2e-36
AT4G29800.2 | chr4:14590862-14592536 REVERSE LENGTH=527 148 5e-36
AT3G63200.1 | chr3:23346140-23347379 FORWARD LENGTH=385 110 1e-24
>AT2G39220.1 | chr2:16375055-16376663 REVERSE LENGTH=500
Length = 499
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 124/268 (46%), Gaps = 24/268 (8%)
Query: 167 SFRRVFGDATLKDTVAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVXXXXXXXXX 226
+ + F + TLKDT+ P+L+PCYDL ++APF+FSRADA+E+D YDF L +V
Sbjct: 222 AMKESFEELTLKDTLKPVLIPCYDLTSSAPFLFSRADALETDGYDFKLWEVCRATWAEPG 281
Query: 227 XXXXV--RSVDGRTXXXXXXXXXXXXXXXXXXXITHVLHNKQEFPLATTVDDILVLSIGT 284
V RSVDG+T ITHVLHNKQEFP V+D+LVLS+GT
Sbjct: 282 VFEPVEMRSVDGKT-RCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGT 340
Query: 285 GXXXXXXXXXXXXXXXXXXEMA----RVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQX 340
G A R++A+G AD VD++V+MAFG SNYVRIQ
Sbjct: 341 GQLVDVKYDCDKVMKWKAKHWARPAVRISADGAADTVDQAVSMAFGQC--RRSNYVRIQA 398
Query: 341 XXX---------------XXXXXXXXXXXXMLSQRNVESVLFRGRRMSERTNXXXXXXXX 385
ML Q+N ESVLF G++++E +N
Sbjct: 399 NGSSFGPCKPNIDTDASPSNVNMLVGVAEEMLKQKNAESVLFGGKKINEESNYEKLDWLA 458
Query: 386 XXXXXXXXXXXXSPLPNVVIKQVGTPRV 413
P V KQ G RV
Sbjct: 459 GELVLEHQRRSCRIAPTVAFKQSGDRRV 486
>AT3G54950.1 | chr3:20359076-20360774 REVERSE LENGTH=489
Length = 488
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 116/231 (50%), Gaps = 24/231 (10%)
Query: 168 FRRVFGDATLKDTVAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVXXXXXXXXXX 227
+ F + TLKDT+ P+L+PCYDL ++ PF+FSRADA+E+D YDF L +V
Sbjct: 210 MKESFSELTLKDTLKPVLIPCYDLKSSGPFLFSRADALETDGYDFRLSEVCRATWAEPGV 269
Query: 228 XXXV--RSVDGRTXXXXXXXXXXXXXXXXXXXITHVLHNKQEFPLATTVDDILVLSIGTG 285
V +SVDG+T ITHVLHNKQEFP V+D+LVLS+G G
Sbjct: 270 FEPVEMKSVDGQT-KCVAVGGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGMG 328
Query: 286 XXXXXXXXXXXXXXXXXXEMAR----VTAEGVADMVDESVAMAFGHTSGSSSNYVRIQXX 341
AR ++ +G AD VD++VAMAFGH SSNYVRIQ
Sbjct: 329 QLLDVSYEYDRIIKWKAKHWARPAALISNDGAADTVDQAVAMAFGHC--RSSNYVRIQAN 386
Query: 342 ---------------XXXXXXXXXXXXXXMLSQRNVESVLFRGRRMSERTN 377
ML Q+NVESVLF G+R+ E++N
Sbjct: 387 GSNLGPWSPNMDTDPSGSNVNMLMGVAEEMLKQKNVESVLFGGKRIDEQSN 437
>AT4G29800.2 | chr4:14590862-14592536 REVERSE LENGTH=527
Length = 526
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 114/228 (50%), Gaps = 25/228 (10%)
Query: 172 FGDATLKDTVAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVXXXXXXXXXXXXXV 231
F D TLKDT+ P+L+ CYDL++ APF+FSRADA+ESDS+DF LRD+ V
Sbjct: 251 FADLTLKDTLKPILISCYDLSSTAPFLFSRADALESDSFDFRLRDICRATWAEPGTFDPV 310
Query: 232 R--SVDGRTXXXXXXXXXXXXXXXXXXXITHVLHNKQEFPLATTVDDILVLSIGTGXXXX 289
R SVDG+T ITHV HNKQEFP V+D+LVLS+GTG
Sbjct: 311 RTCSVDGKT-RCVAVGGGLAMSNPTAAAITHVFHNKQEFPAVKGVEDLLVLSLGTGQLFE 369
Query: 290 XXXXXXXXXXXXXXE----MARVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQXXX--- 342
E MAR++ +G A+ VD++VAM FG SSNYVRIQ
Sbjct: 370 VNYDYEQVKNWRVKEWARPMARISGDGSAEFVDQAVAMGFGPY--RSSNYVRIQQANGSR 427
Query: 343 -------------XXXXXXXXXXXXXMLSQRNVESVLFRGRRMSERTN 377
ML Q NVESVLF +R+ E +N
Sbjct: 428 LGACGPNVDTDPRAENVKKLTEIADEMLKQNNVESVLFGSKRIGEMSN 475
>AT3G63200.1 | chr3:23346140-23347379 FORWARD LENGTH=385
Length = 384
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 115/264 (43%), Gaps = 20/264 (7%)
Query: 125 GRPRYTAEEALEFVAASVXXXXXXXXX-----XXXXXXXXXXXXXXXSFRRVFGDA-TLK 178
GRP +TA +A++FVA +FRR G T+K
Sbjct: 94 GRPMFTARDAVKFVAEKNSELFEIRYTGVFRRNKRYSGKSMERVLETAFRREDGKVLTMK 153
Query: 179 DTVAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVXXXXXXXXXXXX--XVRSVDG 236
DT PLLVPCYDL T+APF+FSRA A ES S+DF L V V SVDG
Sbjct: 154 DTCKPLLVPCYDLKTSAPFVFSRAGASESPSFDFELWKVCRATSATPSLFKPFSVVSVDG 213
Query: 237 RTXXXXXXXXXXXXXXXXXXXITHVLHNKQEFPLATTVDDILVLSIGTGXXXXXXX---X 293
+T +THVLHNK++FP VDD+LVLS+G G
Sbjct: 214 KT-SCSAVDGGLVMNNPTAAAVTHVLHNKRDFPSVNGVDDLLVLSLGNGPSTMSSSPGRK 272
Query: 294 XXXXXXXXXXEMARVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQXXXXXXXXXXXXXX 353
+ + +GV+D VD+ + AF + ++YVRIQ
Sbjct: 273 LRRNGDYSTSSVVDIVVDGVSDTVDQMLGNAF---CWNRTDYVRIQ-----ANGLTSGGA 324
Query: 354 XXMLSQRNVESVLFRGRRMSERTN 377
+L +R VE+ F +R+ +N
Sbjct: 325 EELLKERGVETAPFGVKRILTESN 348
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,168,675
Number of extensions: 79664
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 4
Length of query: 441
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,310,137
Effective search space: 2817136443
Effective search space used: 2817136443
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)