BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0640000 Os03g0640000|Os03g0640000
(441 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0640000 Patatin family protein 404 e-113
Os03g0784100 Patatin family protein 192 4e-49
Os07g0144500 Patatin family protein 169 3e-42
Os06g0677000 Patatin family protein 148 7e-36
Os12g0611300 Patatin family protein 145 7e-35
Os03g0254400 Patatin family protein 129 5e-30
Os06g0358600 74 3e-13
>Os03g0640000 Patatin family protein
Length = 441
Score = 404 bits (1037), Expect = e-113, Method: Compositional matrix adjust.
Identities = 235/441 (53%), Positives = 235/441 (53%)
Query: 1 MASSPMAMDADKLSYEIFSLLESKXXXXXXXXXXXXXXPCTPARPFLXXXXXMDGRVRVL 60
MASSPMAMDADKLSYEIFSLLESK PCTPARPFL MDGRVRVL
Sbjct: 1 MASSPMAMDADKLSYEIFSLLESKFLFGAGGGGCLSSGPCTPARPFLGGGGGMDGRVRVL 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTGDSXXXXXXXXXXXXXXXXXXXXXXXXXX 120
KRTGDS
Sbjct: 61 AIDGCGSSGAGDALLAAAALARLEAGLRKRTGDSDARVADFFDVAAGAGAGGVLAAMLFL 120
Query: 121 RGPDGRPRYTAEEALEFVAASVXXXXXXXXXXXXXXXXXXXXXXXXSFRRVFGDATLKDT 180
RGPDGRPRYTAEEALEFVAASV SFRRVFGDATLKDT
Sbjct: 121 RGPDGRPRYTAEEALEFVAASVGRDWAGRRGRWARLFRGGARGAERSFRRVFGDATLKDT 180
Query: 181 VAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVXXXXXXXXXXXXXVRSVDGRTXX 240
VAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDV VRSVDGRT
Sbjct: 181 VAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVCAATCAAGSTAAAVRSVDGRTAI 240
Query: 241 XXXXXXXXXXXXXXXXXITHVLHNKQEFPLATTVDDILVLSIGTGXXXXXXXXXXXXXXX 300
ITHVLHNKQEFPLATTVDDILVLSIGTG
Sbjct: 241 AAASGGVAAMGNPAAAAITHVLHNKQEFPLATTVDDILVLSIGTGASTSATATPMPTRSP 300
Query: 301 XXXEMARVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQXXXXXXXXXXXXXXXXMLSQR 360
EMARVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQ MLSQR
Sbjct: 301 SPREMARVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQASKAATALHGAAAAGAMLSQR 360
Query: 361 NVESVLFRGRRMSERTNXXXXXXXXXXXXXXXXXXXXSPLPNVVIKQVGTPRVXXXXXXX 420
NVESVLFRGRRMSERTN SPLPNVVIKQVGTPRV
Sbjct: 361 NVESVLFRGRRMSERTNAEKVDAAAAEVVKEHERRRRSPLPNVVIKQVGTPRVSSATTAS 420
Query: 421 XXXXXXXXXXXXXXXXYGSRQ 441
YGSRQ
Sbjct: 421 SGTARTAASTLASPASYGSRQ 441
>Os03g0784100 Patatin family protein
Length = 462
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 175/391 (44%), Gaps = 27/391 (6%)
Query: 8 MDADKLSYEIFSLLESKXXXXX---XXXXXXXXXPCTPARPFLXXXXXMDGRVRVLXXXX 64
+D DKL+YEIFS+LESK P + L + R +V
Sbjct: 12 LDVDKLTYEIFSILESKFLFGYDDPKLVFSGGDEPQGAVKGTLARGPAVVERGKVCVLSI 71
Query: 65 XXXXXXXXXXXXXXXXXXXXXXXXKRTGDSXXXXXXXXXXXXXXXXXXXXXXXXXXRGPD 124
+RTGD RG D
Sbjct: 72 DGGGRAADGLLAGAALVSLEASLRRRTGDETARLADFFDVAAGSGAGGVLAAMLVARGGD 131
Query: 125 GRPRYTAEEALEFVAASVXXXXXXXXXXXXXXXXXXXXXX-XXSFRRVFGDATLKDTVAP 183
GRP ++AE+AL F+ S+ +FR+VFGD TL+DTV P
Sbjct: 132 GRPMFSAEDALAFLMRSLRRGWSGGGGGGAAGGIRALFRRPGAAFRKVFGDLTLRDTVRP 191
Query: 184 LLVPCYDLATAAPFMFSRADAVESDSYDFALRDVXXXXXX---XXXXXXXVRSVDGRTXX 240
+LVPCYDLA+A PF+FSRADAVE+ +YDF LRDV VRS DG T
Sbjct: 192 VLVPCYDLASAGPFLFSRADAVETAAYDFRLRDVCAATCAGSDGSASAVEVRSSDGAT-R 250
Query: 241 XXXXXXXXXXXXXXXXXITHVLHNKQEFPLATTVDDILVLSIGTGXXXXXXXXXXXXXXX 300
ITHVL+NK+EFPLA V+D+LV+SIG+G
Sbjct: 251 IAAVGGGLALGNPTAAAITHVLNNKREFPLAAGVEDLLVISIGSG---ECDNRPTGGAAA 307
Query: 301 XXXEMARVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQXXXX--------------XXX 346
E+ R+ AEGVADMVD++VAMAFGH ++NY+RIQ
Sbjct: 308 STSEIVRIAAEGVADMVDQAVAMAFGHN--RTNNYIRIQAMGSPRASRGGMRCGGGGGGD 365
Query: 347 XXXXXXXXXMLSQRNVESVLFRGRRMSERTN 377
MLSQ+NVESVLFRG++++E+TN
Sbjct: 366 GAGWGVAEEMLSQKNVESVLFRGKKLAEQTN 396
>Os07g0144500 Patatin family protein
Length = 413
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 137/271 (50%), Gaps = 27/271 (9%)
Query: 121 RGPDGRPRYTAEEALEFVAASVXXXXXXXXXXXXXXXXXXXXXXXXSFRRVFGDATLKDT 180
RGP GRP Y+A++AL F+ V +F +VFG+ TL+DT
Sbjct: 113 RGPCGRPMYSADDALGFLLRRVRRRGWSSRAGGLLRRPAG------AFHKVFGELTLRDT 166
Query: 181 VAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVXXXXXXXXXXXXXVR--SVDGRT 238
V P+LVPCYDLAT APF+FSRADA +S +YDF LRD V SVDG T
Sbjct: 167 VRPVLVPCYDLATRAPFLFSRADAAQSPAYDFRLRDACAATCAPSGGGAAVEASSVDGVT 226
Query: 239 XXXXXXXXXXXXXXXXXXXITHVLHNKQEFPLATTVDDILVLSIGTGXXXXXXXXXXXXX 298
ITHVL+N++EFP A VD++LV+SIGTG
Sbjct: 227 -RITAVGSGVALGNPTAAAITHVLNNRREFPAAAGVDNLLVISIGTGEAAGSSSRHRART 285
Query: 299 XXXXXEMARVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQ------------XXXXXXX 346
+AR+ AEG +DMVD++VAMAFG +SNYVRIQ
Sbjct: 286 PV----IARIAAEGASDMVDQAVAMAFGQH--RTSNYVRIQGMGVARRRGGGVACGGETA 339
Query: 347 XXXXXXXXXMLSQRNVESVLFRGRRMSERTN 377
ML QRNVE+V+F+GRR++ TN
Sbjct: 340 EKAVWVAEAMLQQRNVEAVMFQGRRLAGETN 370
>Os06g0677000 Patatin family protein
Length = 450
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 123/247 (49%), Gaps = 14/247 (5%)
Query: 168 FRRVFGDATLKDTVAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVXXXXXXXXXX 227
F++VFGD T++D PLL+PCYD+ATAAPF+FSRADAVE+D++DF L V
Sbjct: 195 FKKVFGDLTVRDAAKPLLIPCYDMATAAPFVFSRADAVEADAFDFPLWQV--CAAACGVG 252
Query: 228 XXXVRSVDGRTXXXXXXXXXXXXXXX--XXXXITHVLHNKQEFPLATTVDDILVLSIGTG 285
V S+DGRT +THVLHNK+EFP A D++VLS+G
Sbjct: 253 PAEVASLDGRTRLRAAAATGGGGAVSNPAAVAVTHVLHNKREFPFAAGAGDLVVLSLGGN 312
Query: 286 XXXXXXXXXXXXXXXXXXEMARVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQXXXXXX 345
+ R+ ADMVD++V+MAFG ++NY+RIQ
Sbjct: 313 -------NAAAGPRASSSSLLRIAGACQADMVDQAVSMAFGEC--RATNYIRIQGNGIVA 363
Query: 346 XXXXXXXXXXMLSQRNVESVLFRGRRMSERTNXXXXXXXXXXXXXXXXXXXXSPLPNVVI 405
M ++R+VESVLFRG+++ +TN S P V+I
Sbjct: 364 GAAAATAEAAM-TERSVESVLFRGKKVMAQTNGERLDGVAEQLVREHHRRMESKAPVVLI 422
Query: 406 KQVGTPR 412
K TPR
Sbjct: 423 KPSATPR 429
>Os12g0611300 Patatin family protein
Length = 359
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 136/331 (41%), Gaps = 25/331 (7%)
Query: 8 MDADKLSYEIFSLLESKX--XXXXXXXXXXXXXPCTPARPFLXXXXXMDGRVRVLXXXXX 65
+D KLSYEIFSLLES P TP R L G+VRVL
Sbjct: 15 VDLGKLSYEIFSLLESNFLFGAGAGGGGGVCSLPGTPGRALL------GGKVRVLAIDGC 68
Query: 66 XXXXXXXXXXXXXXXXXXXXXXXKRTGDSXXXXXXXXXXXXXXXXXXXXXXXXXXRGPDG 125
K +GD +G DG
Sbjct: 69 GPGPGDALLAAAALVRLETALREK-SGDGDARVADFFDAAAGAGAGGVLAAMLFLKGADG 127
Query: 126 RPRYTAEEALEFVAASVXXXXXXXXXXXXXXXXXX---------XXXXXXSFRRVFGDAT 176
RPRYTA +AL FVAAS+ S RRVFGDA
Sbjct: 128 RPRYTAADALAFVAASLGKGGWRGGGGGGGGRRWWGVAALFRRGSSAERSSLRRVFGDAH 187
Query: 177 LKDTVAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVXXXXXXXXXXXXXVRSVDG 236
TVAPLLVPCYDLATAAPF+FSRADAVES S+DF LRDV VRSVDG
Sbjct: 188 AGTTVAPLLVPCYDLATAAPFLFSRADAVESGSFDFRLRDVCAATCAGGAAATAVRSVDG 247
Query: 237 RTXXXXXXXXXXXXXXXXXXXITHVLHNKQEFPLATTVDDIL-------VLSIGTGXXXX 289
RT ITHVLHNKQEFPLA VDD+L S T
Sbjct: 248 RTAIAAASGGVAAMGNPTAAAITHVLHNKQEFPLAAGVDDLLVVSIGSGSSSAATPSTAA 307
Query: 290 XXXXXXXXXXXXXXEMARVTAEGVADMVDES 320
EM R+TAEGVADMV ++
Sbjct: 308 GWRTPLPSRSPSPAEMVRLTAEGVADMVKKT 338
>Os03g0254400 Patatin family protein
Length = 469
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 111/235 (47%), Gaps = 29/235 (12%)
Query: 169 RRVFGDA-TLKDTVAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVXXXXXXXXX- 226
+ FG+ TL+DT+ P+L+ CYDL ++AP +FSRADA+ES+SYDF L +V
Sbjct: 193 KTAFGEELTLRDTIKPVLISCYDLKSSAPLVFSRADALESESYDFRLCEVGRAAWSEAGR 252
Query: 227 -XXXXVRSVDGRTXXXXXXXXXXXXXXXXXXXITHVLHNKQEFPLATTVDDILVLSIGTG 285
V SVDG T ITHVLHNK EFP V+D+LVLSIG
Sbjct: 253 FEPAEVASVDGAT-SCAAVDGGPIMGSPAAAAITHVLHNKHEFPFVRGVEDLLVLSIGGC 311
Query: 286 XXXXXXXXXX--------XXXXXXXXEMARVTAEGVADMVDESVAMAFGHTSGSSSNYVR 337
+AR+ A+G AD+VD +VA AFG SSNY+R
Sbjct: 312 SAGGTGAAADADLRRLRRWGPKDWARPIARIAADGAADLVDHAVARAFGQC--RSSNYLR 369
Query: 338 IQXXXX---------------XXXXXXXXXXXXMLSQRNVESVLFRGRRMSERTN 377
IQ ML RNVESVLF GRR+ E+TN
Sbjct: 370 IQAKRESMPPCGPDGEYDPTPANVHALLAAADEMLKHRNVESVLFEGRRVGEQTN 424
>Os06g0358600
Length = 167
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 127 PRYTAEEALEFVAASVXXXXXXXXXXXXXXXXXXXXXXXXSFRRVFGDATLKDTVAPLLV 186
PRY A +AL FV AS+ S RRVFG TL+DTVAPLLV
Sbjct: 77 PRYMAADALAFVVASLGKGGWYGGEGRRRWVAERS-----SLRRVFGTVTLRDTVAPLLV 131
Query: 187 PCYDLATAAPFMFSRADAV--------ESDSYDF 212
PCYDLATAA F+ SRA AV DS+DF
Sbjct: 132 PCYDLATAASFLLSRAGAVPLLPRQRRREDSFDF 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,805,326
Number of extensions: 132360
Number of successful extensions: 187
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 7
Length of query: 441
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 337
Effective length of database: 11,605,545
Effective search space: 3911068665
Effective search space used: 3911068665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)