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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0144500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Patatin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0336) R2 : 0.488
β1 : -1.21 (0.123) R2dD : 0.113 R2D : 0.105
β2 : 0.824 (0.0941) R2dC : 0.108 R2C : 0.183
β3 : 0.745 (0.0901) R2dE : 0.0932 R2E : 0.171
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.56 (0.307) R2dD*E : 0.087 R2D*E : 0.0907
γ1 : -0.259 (0.0721) R2dN8 : 0.0155 R2N8 : 0.00262
σ : 0.627
deviance : 181.29
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_____
C
peak time of C : 8.29
E
wheather : humidity
threshold : 76.16
memory length : 63
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.07
open length of G : 5.98

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.96 0.625 3.44 -1.17 0.823 0.761 -1.27 -2.25 -0.226 8.35 76 63 6 5.97
192.52 0.646 3.4 -1.07 0.769 0.777 -2.52 -- -0.166 8.61 76 63 5.67 6.24
181.29 0.627 3.44 -1.21 0.824 0.745 -- -2.56 -0.259 8.29 76.16 63 6.07 5.98
211.54 0.677 3.43 -1.29 0.823 0.753 -- -- -0.245 8.14 76.46 64 6.08 5.88
208.76 0.673 3.45 -1.26 -- 0.935 -- -2.47 -0.238 -- 85.14 52 5.77 6.26
210.76 0.681 3.44 -1.18 1.14 -- -2.41 -- -0.298 9.38 -- -- -- --
231.67 0.713 3.44 -1.27 1.16 -- -- -- -0.302 9.19 -- -- -- --
239.16 0.72 3.46 -1.28 -- 0.928 -- -- -0.258 -- 86 55 5.65 6.57
255.82 0.745 3.41 -- 0.849 0.716 -- -- -0.104 8.31 76.05 64 6.44 5.5
309.09 0.822 3.47 -1.28 -- -- -- -- -0.296 -- -- -- -- --
274.38 0.775 3.41 -- 1.16 -- -- -- -0.16 9.28 -- -- -- --
282.18 0.782 3.43 -- -- 0.911 -- -- -0.138 -- 87.53 61 6.4 5.59
352.11 0.876 3.44 -- -- -- -- -- -0.155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.00 humidity 90 30 < th dose dependent rect. 5 7
3 181.34 humidity 90 30 < th dose dependent rect. 7 5
13 182.43 humidity 80 90 < th dose independent rect. 6 6
18 182.58 radiation 10 90 > th dose independent rect. 6 6
34 182.84 humidity 80 90 < th dose independent rect. 24 12
36 182.91 humidity 90 30 < th dose dependent rect. 20 16
49 183.65 humidity 80 90 < th dose independent rect. 21 15
149 185.86 humidity 80 30 < th dose dependent sin 7 NA
192 186.63 radiation 1 30 > th dose dependent rect. 5 7
322 187.71 humidity 50 30 > th dose dependent sin 5 NA
384 188.30 humidity 80 90 < th dose independent sin 7 NA
477 189.19 radiation 10 90 > th dose independent sin 6 NA
492 189.38 humidity 70 30 < th dose independent rect. 11 1
496 189.43 humidity 70 30 > th dose independent sin 7 NA
502 189.49 radiation 40 90 < th dose dependent sin 7 NA
506 189.52 radiation 1 90 > th dose dependent sin 8 NA
655 190.29 wind 1 30 > th dose independent rect. 12 20
878 191.92 humidity 60 30 > th dose dependent rect. 1 14
884 191.95 radiation 20 270 < th dose dependent rect. 21 11
904 192.12 humidity 50 270 > th dose dependent rect. 23 16
914 192.17 humidity 70 30 > th dose independent rect. 1 13
922 192.20 radiation 30 270 < th dose dependent sin 10 NA
968 192.37 atmosphere 1015 30 < th dose dependent rect. 12 20