Os06g0677000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Patatin family protein.
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Os06g0677000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Patatin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 204.55 | 0.672 | 3.12 | 0.00503 | 0.0994 | 9.14 | -0.129 | 17.9 | -0.107 | 13.8 | 7.117 | 11 | 12 | 1.04 |
| 232.3 | 0.715 | 3.07 | -0.159 | 0.124 | 0.73 | -0.203 | -- | -0.12 | 13.4 | 6.688 | 125 | 11.9 | 0.85 |
| 204.61 | 0.666 | 3.12 | 0.00152 | 0.0984 | 9.13 | -- | 17.8 | -0.108 | 13.7 | 7.123 | 11 | 12 | 1.11 |
| 216.4 | 0.685 | 3.08 | -0.179 | 0.116 | 1.36 | -- | -- | -0.104 | 12.9 | 6.8 | 376 | 11.6 | 0.00963 |
| 205.19 | 0.667 | 3.12 | 0.000395 | -- | 9.18 | -- | 17.8 | -0.109 | -- | 7.125 | 11 | 12 | 1.12 |
| 233.94 | 0.717 | 3.07 | -0.195 | 0.147 | -- | -0.301 | -- | -0.132 | 13.2 | -- | -- | -- | -- |
| 234.31 | 0.717 | 3.07 | -0.205 | 0.147 | -- | -- | -- | -0.134 | 13.1 | -- | -- | -- | -- |
| 213.66 | 0.681 | 3.06 | -0.107 | -- | 2.05 | -- | -- | -0.139 | -- | 7.196 | 364 | 11.6 | 0.0167 |
| 213.34 | 0.68 | 3.05 | -- | 0.0989 | 2.2 | -- | -- | -0.105 | 11.4 | 7.303 | 355 | 11.6 | 0.0167 |
| 235.65 | 0.717 | 3.07 | -0.211 | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
| 235.43 | 0.718 | 3.06 | -- | 0.15 | -- | -- | -- | -0.111 | 13.2 | -- | -- | -- | -- |
| 202.72 | 0.663 | 3.07 | -- | -- | 3.16 | -- | -- | -0.119 | -- | 7.331 | 146 | 11.6 | 0.0167 |
| 236.82 | 0.718 | 3.07 | -- | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 204.99 | wind | 7.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 3 | 210.45 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 4 | 210.45 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 20 | 210.45 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 21 | 210.45 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 52 | 212.62 | wind | 7.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 54 | 213.65 | wind | 7.0 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 56 | 214.47 | wind | 1.0 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 59 | 214.61 | wind | 1.0 | 90 | < th | dose dependent | rect. | 16 | 5 |
| 61 | 214.64 | wind | 7.0 | 720 | > th | dose independent | rect. | 2 | 7 |
| 65 | 214.96 | wind | 5.0 | 720 | > th | dose independent | rect. | 3 | 5 |
| 74 | 215.70 | wind | 5.0 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 80 | 215.89 | wind | 5.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 136 | 217.82 | wind | 5.0 | 720 | < th | dose independent | rect. | 1 | 8 |
| 155 | 218.25 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 175 | 218.69 | wind | 9.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 195 | 218.97 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 238 | 220.01 | wind | 1.0 | 30 | < th | dose independent | rect. | 21 | 1 |
| 251 | 220.23 | wind | 9.0 | 720 | > th | dose independent | rect. | 9 | 1 |
| 285 | 220.81 | wind | 7.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 286 | 220.81 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 306 | 221.04 | wind | 7.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 318 | 221.13 | wind | 7.0 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 320 | 221.16 | wind | 7.0 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 332 | 221.31 | wind | 7.0 | 4320 | > th | dose independent | rect. | 23 | 11 |
| 334 | 221.34 | wind | 7.0 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 335 | 221.35 | wind | 7.0 | 4320 | < th | dose independent | rect. | 23 | 11 |
| 468 | 222.40 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 15 |
| 474 | 222.45 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 477 | 222.47 | wind | 5.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 479 | 222.48 | wind | 5.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 493 | 222.53 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 506 | 222.55 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 3 | 17 |
| 515 | 222.56 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 3 | 14 |
| 516 | 222.56 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 518 | 222.57 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 3 | 2 |
| 524 | 222.59 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 15 |
| 532 | 222.63 | wind | 5.0 | 720 | > th | dose independent | sin | 6 | NA |
| 537 | 222.65 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 15 |
| 546 | 222.68 | wind | 5.0 | 720 | < th | dose independent | sin | 6 | NA |
| 550 | 222.70 | wind | 5.0 | 4320 | < th | dose independent | rect. | 2 | 3 |
| 585 | 222.80 | wind | 5.0 | 4320 | > th | dose independent | rect. | 2 | 3 |
| 621 | 222.90 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 623 | 222.90 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 719 | 223.17 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 12 | 2 |
| 784 | 223.34 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 12 | 18 |
| 787 | 223.35 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 11 | 3 |
| 791 | 223.36 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 792 | 223.36 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 794 | 223.36 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 824 | 223.44 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 828 | 223.44 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 843 | 223.47 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 855 | 223.49 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 3 | 11 |
| 865 | 223.50 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 867 | 223.50 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 891 | 223.55 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 894 | 223.55 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 921 | 223.60 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 928 | 223.60 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 947 | 223.62 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 23 | 7 |