BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0596600 Os12g0596600|AK064196
(233 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0596600 Hypothetical protein 423 e-119
Os03g0769400 Conserved hypothetical protein 290 8e-79
Os07g0123500 Thioredoxin-related domain containing protein 282 1e-76
Os04g0579700 Similar to Predicted protein 192 2e-49
Os07g0259700 Similar to PRLI-interacting factor G (Fragment) 140 1e-33
Os04g0278000 Similar to PRLI-interacting factor G (Fragment) 122 2e-28
Os12g0188500 Conserved hypothetical protein 115 3e-26
>Os12g0596600 Hypothetical protein
Length = 233
Score = 423 bits (1088), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/233 (90%), Positives = 210/233 (90%)
Query: 1 IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDGXXXXXXXXXXXXCQGCLDRLRLLFSE 60
IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDG CQGCLDRLRLLFSE
Sbjct: 1 IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDGSSDISSELLYSSCQGCLDRLRLLFSE 60
Query: 61 ATGQEFSVELTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGKLPVASRH 120
ATGQEFSVELTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGKLPVASRH
Sbjct: 61 ATGQEFSVELTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGKLPVASRH 120
Query: 121 TVSCITARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWLQCSCRSFDRKLVEEGIG 180
TVSCITARLFVGIGRGEMLPSKNTR IDDYSWLQCSCRSFDRKLVEEGIG
Sbjct: 121 TVSCITARLFVGIGRGEMLPSKNTRLLLLQVWLQPLIDDYSWLQCSCRSFDRKLVEEGIG 180
Query: 181 QTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVRPYVSQAR 233
QTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVRPYVSQAR
Sbjct: 181 QTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVRPYVSQAR 233
>Os03g0769400 Conserved hypothetical protein
Length = 522
Score = 290 bits (741), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 173/239 (72%), Gaps = 7/239 (2%)
Query: 1 IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDGXXXXXXXXXXXXCQGCLDRLRLLFSE 60
I+E+VLKS +DR RREMK+LVL LLK+++ CT CQ CL+ L LF +
Sbjct: 276 IIELVLKSGEDRGRREMKSLVLKLLKENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQ 335
Query: 61 ATGQEFSVE-------LTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGK 113
AT +F+ + + RQI LE DNLLWL EIL ++ +F +W+NQ ++AELH K
Sbjct: 336 ATADDFAEQSLDLKEPVFRQIALEADNLLWLTEILADRNAAGEFAVMWSNQGELAELHSK 395
Query: 114 LPVASRHTVSCITARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWLQCSCRSFDRK 173
LP SRH VSC+TARLFV IG+G+MLPSK+TR +DDY+WLQ CRSFDRK
Sbjct: 396 LPTKSRHLVSCVTARLFVAIGKGDMLPSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRK 455
Query: 174 LVEEGIGQTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVRPYVSQA 232
+VEEGIG+TILTLPLEDQ+++LL+WLG FLK+GD+CPNLQ+AFEVWW+RTFVRPYV Q
Sbjct: 456 VVEEGIGRTILTLPLEDQQTILLSWLGSFLKVGDSCPNLQKAFEVWWKRTFVRPYVEQG 514
>Os07g0123500 Thioredoxin-related domain containing protein
Length = 527
Score = 282 bits (722), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/236 (57%), Positives = 172/236 (72%), Gaps = 7/236 (2%)
Query: 1 IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDGXXXXXXXXXXXXCQGCLDRLRLLFSE 60
I+E+VLKS+DDR RREMK+LVL LLK++N T+G C+ CL+ L LF +
Sbjct: 279 IIELVLKSSDDRGRREMKSLVLKLLKENNIWTNGSSDSCVVTFYSSCRNCLESLSNLFRQ 338
Query: 61 ATGQEFSVE-------LTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGK 113
A+ EFS + + RQITLE DNLLWL EIL ++ D+ ++WA+Q ++A+LH +
Sbjct: 339 ASEPEFSEQSSDSKEVIFRQITLEADNLLWLAEILADRNAADELTSIWASQGELAKLHCR 398
Query: 114 LPVASRHTVSCITARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWLQCSCRSFDRK 173
+PV RH +SC+TARLFV +G+GE LPSK TR +DDY+WLQ CR FDRK
Sbjct: 399 IPVMHRHLISCVTARLFVAVGKGEALPSKETRQLLLDVWLQPLMDDYNWLQHGCRWFDRK 458
Query: 174 LVEEGIGQTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVRPYV 229
++EEGIGQTILTLPLEDQ+S+LL WLGRFLK+GD+CPNLQRAFEVWWRRTFVRPY
Sbjct: 459 VIEEGIGQTILTLPLEDQQSILLTWLGRFLKVGDSCPNLQRAFEVWWRRTFVRPYT 514
>Os04g0579700 Similar to Predicted protein
Length = 533
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 4/220 (1%)
Query: 7 KSTDDRARREMKALVLNLLKDSNHCTDGXXX--XXXXXXXXXCQGCLDRLRLLFSEATGQ 64
+ D++ARREMK LV +L++++ G C GCL L F A G
Sbjct: 294 EGKDEKARREMKGLVSKMLRENSTSRGGAIGGDLRKESLYSACNGCLRLLHEQFEMAAGG 353
Query: 65 EFSVELTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGKLPVASRHTVSC 124
+ S QI + DNL W+++ILV ++I +DF+ WA Q ++AELHGK+P R+ VS
Sbjct: 354 DQSE--VAQIARQADNLHWMLDILVERQIAEDFLRTWAMQIELAELHGKVPAIHRYEVSR 411
Query: 125 ITARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWLQCSCRSFDRKLVEEGIGQTIL 184
+TARLFVG+G+G++L SK R +D+ W++ +C+ DR L+E+G+ TIL
Sbjct: 412 VTARLFVGVGKGQILVSKEVRCQLLSTWLEPFYEDFGWMRRACKGLDRHLIEDGLANTIL 471
Query: 185 TLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTF 224
TLPL Q+ +LLAW RFL G++CPN+QR FEVWWRR F
Sbjct: 472 TLPLATQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAF 511
>Os07g0259700 Similar to PRLI-interacting factor G (Fragment)
Length = 564
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 10/239 (4%)
Query: 1 IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDGXXXXXXXXXXXXCQGCLDRLRLLFSE 60
+++ V ST+ AR++M++LV LL S+ C CL+ L L+ E
Sbjct: 323 LIQSVTSSTNSGARKDMQSLVNGLLSKSSVYQKDMAGLNRESLYNICYACLNSLVDLYDE 382
Query: 61 AT------GQEFSVELTR----QITLETDNLLWLVEILVNQRICDDFVALWANQSKIAEL 110
AT Q ++ ++ +I+ +T+NL WL++ILVN + ++FV LWA Q ++ +
Sbjct: 383 ATEATNHTAQALVIKGSKPFIERISQQTENLNWLLDILVNIDMAEEFVELWAKQDRLIRI 442
Query: 111 HGKLPVASRHTVSCITARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWLQCSCRSF 170
H + R+ +S I+A +F+ +G+G++ R + D+ WLQ +
Sbjct: 443 HEQASPMMRYELSRISASVFIALGKGKVQCRGELRSLLFYGWFSPMLLDFGWLQRCSKGL 502
Query: 171 DRKLVEEGIGQTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVRPYV 229
D + +EE +GQ +LTLPL+ Q+ + W F G CPNL RAF+VWWRR+FVR V
Sbjct: 503 DVRSLEENLGQALLTLPLKQQQCLFEEWFQCFASKGSECPNLTRAFQVWWRRSFVRSSV 561
>Os04g0278000 Similar to PRLI-interacting factor G (Fragment)
Length = 527
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 127/237 (53%), Gaps = 4/237 (1%)
Query: 1 IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDGXXXXXXXXXXXXCQGCLDRLRLLFSE 60
+++ V ST+ AR+EM++LV LL S+ C CL+ L F+E
Sbjct: 291 LIQSVTSSTNTGARKEMQSLVNGLLSRSSVYQKDLSGLNKGSLYQICCSCLNSLVEHFTE 350
Query: 61 ATGQEF----SVELTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGKLPV 116
+ S + +++ +T+NL WL +ILVN + ++FV LWA Q + +HG+
Sbjct: 351 DLCSDKIVRDSKPMIERVSKQTENLNWLFDILVNNDMAEEFVELWAKQEDLISMHGQASA 410
Query: 117 ASRHTVSCITARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWLQCSCRSFDRKLVE 176
R+ +S I+A +F+ +G+G++ + R + D+ WLQ + D +++E
Sbjct: 411 MFRYELSRISANVFIVLGKGKVQCPSDLRSQLFYGWFRPMLMDFGWLQRCSKGLDMRMLE 470
Query: 177 EGIGQTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVRPYVSQAR 233
E +GQ +LTLPL+ Q+S+ W F G CPNL RAF+VWWRR+FVR + R
Sbjct: 471 ENLGQALLTLPLQQQQSLFEEWFQCFASRGTECPNLSRAFQVWWRRSFVRSSLESRR 527
>Os12g0188500 Conserved hypothetical protein
Length = 602
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 121/227 (53%), Gaps = 8/227 (3%)
Query: 1 IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDGXXXXXXXXXXXXCQGCLDRLRLLFSE 60
+M+ + K T++ AR++++ LV +L ++ C CL+ L LF E
Sbjct: 285 LMDSITKGTNNNARKDLRTLVDGILSRTSIYIKSDKELDMMNIYSICHTCLNCLVELFGE 344
Query: 61 ATGQEFSVELT--------RQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHG 112
A+ S + T +I + +NL WL++IL+++++ ++FV LWA+Q+ ++ +H
Sbjct: 345 ASDLGPSGQTTISVGKGPHERICKQVENLTWLLQILIDRQMGEEFVDLWASQNTLSTMHE 404
Query: 113 KLPVASRHTVSCITARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWLQCSCRSFDR 172
+ R+ +S I+A +F+ +G G++ + +R + D+ WL+ + +
Sbjct: 405 RFSPMVRYELSRISATIFIAMGSGKLHCTSTSRLGIFEAWFRPLLVDFGWLRRCPKGLNM 464
Query: 173 KLVEEGIGQTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVW 219
+E+GIGQ +LTL L+ Q+ + + W F G CPNL RAF+V+
Sbjct: 465 ATLEDGIGQALLTLTLKHQQVLFMEWFETFSGQGRECPNLMRAFQVF 511
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,722,535
Number of extensions: 227174
Number of successful extensions: 653
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 7
Length of query: 233
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 135
Effective length of database: 11,918,829
Effective search space: 1609041915
Effective search space used: 1609041915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)