BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0564100 Os12g0564100|AK072403
(181 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0564100 Similar to R2R3MYB-domain protein (Fragment) 356 4e-99
Os11g0684000 Similar to Transcription factor MYB21 (Myb-rel... 154 4e-38
Os03g0315400 Similar to Typical P-type R2R3 Myb protein (Fr... 109 1e-24
Os07g0688200 Similar to Typical P-type R2R3 Myb protein (Fr... 108 2e-24
Os01g0298400 Myb, DNA-binding domain containing protein 104 3e-23
Os01g0128000 Myb, DNA-binding domain containing protein 96 2e-20
>Os12g0564100 Similar to R2R3MYB-domain protein (Fragment)
Length = 181
Score = 356 bits (914), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 169/181 (93%), Positives = 169/181 (93%)
Query: 1 LHFDPIGGVLIICRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDANSARFKDAMRY 60
LHFDPIGGVLIICRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDANSARFKDAMRY
Sbjct: 1 LHFDPIGGVLIICRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDANSARFKDAMRY 60
Query: 61 LWMPRLADASQLGDHHGYNSTTAMGDAHGMPVMTXXXXXXXXXXXXYDGGLYANVQDNEM 120
LWMPRLADASQLGDHHGYNSTTAMGDAHGMPVMT YDGGLYANVQDNEM
Sbjct: 61 LWMPRLADASQLGDHHGYNSTTAMGDAHGMPVMTSSSSDSFATSESYDGGLYANVQDNEM 120
Query: 121 VNGGDYWMQGANKGFCSNYESEQLHPHEHSQFQDPDLVGWVQGFSEGISENFWSLEDIWK 180
VNGGDYWMQGANKGFCSNYESEQLHPHEHSQFQDPDLVGWVQGFSEGISENFWSLEDIWK
Sbjct: 121 VNGGDYWMQGANKGFCSNYESEQLHPHEHSQFQDPDLVGWVQGFSEGISENFWSLEDIWK 180
Query: 181 M 181
M
Sbjct: 181 M 181
>Os11g0684000 Similar to Transcription factor MYB21 (Myb-related protein 21)
(AtMYB21) (Myb homolog 3) (AtMyb3)
Length = 285
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/190 (47%), Positives = 104/190 (54%), Gaps = 32/190 (16%)
Query: 14 RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDANSARFKDAMRYLWMPRLADASQLG 73
RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCD NS RFKDAM+YLWMPRLA+
Sbjct: 105 RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDVNSKRFKDAMKYLWMPRLAERI--- 161
Query: 74 DHHGYNSTTAMGDAHGMPVMTXXXXXXXXXXXXYDGGLYANVQ----------------- 116
H + GD + +DG
Sbjct: 162 -HARAGAVDDSGDYSNNDLSCVSGVTMATVANCFDGSPSMVTSSSSDSFTSESQDLKKIN 220
Query: 117 -----DNEMVNGGDYWMQGANKGFCSNYESEQLHPHEHSQFQDPDLVGWVQGFSEGISEN 171
D+E +N D WMQ + F S ++ P+ + QFQD L GWVQGFSEG+SE
Sbjct: 221 LHVHGDDEKMNSED-WMQEVDHEFWST----EIQPN-NEQFQDQQLNGWVQGFSEGLSET 274
Query: 172 FWSLEDIWKM 181
WSLEDIWKM
Sbjct: 275 LWSLEDIWKM 284
>Os03g0315400 Similar to Typical P-type R2R3 Myb protein (Fragment)
Length = 329
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/55 (87%), Positives = 50/55 (90%)
Query: 14 RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDANSARFKDAMRYLWMPRLAD 68
RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQL CD NS +FKD MRYLWMPRL +
Sbjct: 96 RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSQQFKDVMRYLWMPRLVE 150
>Os07g0688200 Similar to Typical P-type R2R3 Myb protein (Fragment)
Length = 300
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/55 (87%), Positives = 50/55 (90%)
Query: 14 RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDANSARFKDAMRYLWMPRLAD 68
RWSKIAQHLPGRTDNEIKNYWRTRVQKHAK LNCD NS +FKD MRYLWMPRL +
Sbjct: 95 RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKHLNCDVNSQQFKDLMRYLWMPRLLE 149
>Os01g0298400 Myb, DNA-binding domain containing protein
Length = 293
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 56/73 (76%), Gaps = 7/73 (9%)
Query: 3 FDPIGGVLII-------CRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDANSARFK 55
F P +LI+ RWS+IAQH+PGRTDNEIKNYWRTRVQKHAKQL CD NS +FK
Sbjct: 79 FTPQEQLLILELHFRWGNRWSRIAQHMPGRTDNEIKNYWRTRVQKHAKQLGCDVNSRQFK 138
Query: 56 DAMRYLWMPRLAD 68
D MR+LWMPRL +
Sbjct: 139 DVMRHLWMPRLVE 151
>Os01g0128000 Myb, DNA-binding domain containing protein
Length = 350
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 47/55 (85%)
Query: 14 RWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDANSARFKDAMRYLWMPRLAD 68
RWS+IAQHLPGRTDNEIKNYWRTRVQK A+QL DANS F+DA+R WMPRL +
Sbjct: 104 RWSRIAQHLPGRTDNEIKNYWRTRVQKQARQLKVDANSTVFRDAVRCYWMPRLLE 158
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,866,199
Number of extensions: 266609
Number of successful extensions: 577
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 6
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)