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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0564100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to R2R3MYB-domain protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0331) R2 : 0.00471
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.102 (0.0696) R2dN8 : 0.00608 R2N8 : 0.00471
σ : 0.623
deviance : 177.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.46 0.608 3 -0.245 0.0108 -0.412 -0.68 -4.23 0.18 3.73 9.123 4518 -- --
174.9 0.621 3.1 -0.0221 0.104 0.316 -0.759 -- 0.101 4.5 6.1 4371 -- --
168.83 0.605 3 -0.226 0.00595 -0.407 -- -4.16 0.181 3.71 9.117 4511 -- --
175.73 0.617 3.09 0.0294 0.0515 0.319 -- -- 0.0952 4.74 8.9 4372 -- --
168.83 0.605 3 -0.221 -- -0.393 -- -4.11 0.181 -- 9.113 4511 -- --
176.77 0.623 3.1 -0.081 0.0438 -- -0.589 -- 0.0897 4.45 -- -- -- --
177.58 0.624 3.1 -0.0757 0.0633 -- -- -- 0.093 7.56 -- -- -- --
174.25 0.615 3.12 0.0907 -- 0.395 -- -- -0.0186 -- 10 5245 -- --
174.47 0.615 3.12 -- 0.0714 0.37 -- -- -0.00615 4.74 9.899 5222 -- --
177.79 0.623 3.1 -0.0748 -- -- -- -- 0.0939 -- -- -- -- --
177.73 0.624 3.1 -- 0.0627 -- -- -- 0.101 7.64 -- -- -- --
174.3 0.615 3.12 -- -- 0.371 -- -- -0.0259 -- 10.1 5245 -- --
177.94 0.623 3.1 -- -- -- -- -- 0.102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.81 wind 3.0 90 < th dose independent rect. 2 1
2 158.56 temperature 20.0 90 < th dose dependent rect. 2 1
3 159.17 wind 5.0 90 < th dose dependent rect. 2 1
4 159.30 temperature 20.0 30 > th dose dependent rect. 2 1
5 159.31 humidity 70.0 4320 > th dose independent rect. 22 5
7 159.43 temperature 20.0 30 > th dose independent rect. 2 1
10 159.52 atmosphere 1005.0 30 > th dose independent rect. 2 1
11 159.53 atmosphere 1000.0 30 > th dose dependent rect. 2 1
13 159.56 humidity 80.0 30 > th dose independent rect. 2 1
16 159.68 wind 9.0 30 < th dose independent rect. 2 1
17 159.68 temperature 10.0 30 > th dose independent rect. 2 1
19 159.68 temperature 30.0 30 < th dose independent rect. 2 1
20 159.68 humidity 50.0 30 > th dose independent rect. 2 1
24 159.68 atmosphere 1010.0 30 < th dose independent rect. 2 1
26 159.68 radiation 1.0 30 < th dose independent rect. 2 1
31 159.68 precipitation 0.1 30 < th dose independent rect. 2 1
32 159.68 temperature 10.0 30 > th dose independent rect. 3 23
33 159.68 radiation 1.0 30 < th dose dependent rect. 2 1
38 159.68 precipitation 0.1 30 < th dose dependent rect. 2 1
39 159.69 humidity 50.0 30 > th dose dependent rect. 2 1
45 159.77 wind 9.0 30 < th dose dependent rect. 2 1
54 160.14 atmosphere 1015.0 30 < th dose dependent rect. 2 1
58 160.56 temperature 30.0 30 < th dose dependent rect. 2 1
61 160.85 wind 1.0 30 > th dose independent rect. 2 1
77 161.72 humidity 50.0 10 > th dose independent rect. 4 22
79 161.74 wind 9.0 90 < th dose independent rect. 3 23
140 162.24 humidity 70.0 4320 > th dose independent rect. 21 1
141 162.24 atmosphere 995.0 90 > th dose independent rect. 3 23
149 162.86 precipitation 0.1 90 < th dose independent rect. 3 23
150 162.86 precipitation 0.1 90 < th dose dependent rect. 3 23
154 163.43 radiation 1.0 4320 < th dose dependent rect. 3 1
155 163.45 radiation 10.0 43200 < th dose dependent rect. 3 1
165 163.54 wind 9.0 1440 < th dose independent rect. 3 1
166 163.54 temperature 10.0 1440 > th dose independent rect. 3 1
169 163.54 temperature 30.0 1440 < th dose independent rect. 3 1
173 163.54 humidity 50.0 1440 > th dose independent rect. 3 1
182 163.54 atmosphere 995.0 1440 > th dose independent rect. 3 1
183 163.54 radiation 1.0 1440 < th dose independent rect. 3 1
203 163.54 temperature 10.0 1440 > th dose independent rect. 4 23
227 164.34 atmosphere 1010.0 10 < th dose independent rect. 4 22
233 164.50 wind 9.0 90 < th dose dependent rect. 3 23
257 165.09 humidity 90.0 720 > th dose independent rect. 10 1
259 165.09 precipitation 0.1 720 > th dose independent rect. 9 4
260 165.09 precipitation 0.1 720 > th dose dependent rect. 9 4
261 165.11 precipitation 0.1 720 > th dose independent rect. 9 2
263 165.11 precipitation 0.1 720 > th dose dependent rect. 9 2
279 165.19 wind 9.0 4320 > th dose dependent rect. 14 1
280 165.20 humidity 90.0 270 > th dose dependent rect. 10 1
282 165.21 precipitation 0.1 10 < th dose independent rect. 4 22
283 165.21 precipitation 0.1 10 < th dose dependent rect. 4 22
319 165.29 wind 9.0 4320 > th dose independent rect. 11 4
344 165.48 wind 5.0 30 < th dose independent rect. 4 22
353 165.56 wind 9.0 4320 > th dose independent rect. 4 11
356 165.57 wind 9.0 4320 > th dose independent rect. 23 16
363 165.62 wind 9.0 4320 > th dose dependent rect. 11 4
414 165.87 wind 9.0 4320 < th dose independent rect. 22 18
424 165.99 wind 9.0 4320 > th dose dependent rect. 4 11
427 166.01 wind 9.0 4320 > th dose dependent rect. 23 16
434 166.05 wind 9.0 4320 < th dose independent rect. 5 11
440 166.07 wind 9.0 4320 < th dose independent rect. 11 4
444 166.08 humidity 70.0 4320 > th dose independent rect. 20 10
447 166.10 wind 9.0 4320 > th dose independent rect. 13 2
448 166.10 wind 1.0 10 < th dose dependent rect. 11 1
450 166.11 wind 9.0 4320 < th dose independent rect. 2 14
522 166.29 wind 1.0 90 < th dose dependent rect. 11 1
582 166.58 wind 1.0 90 < th dose dependent rect. 7 5
591 166.65 atmosphere 1010.0 10 < th dose independent rect. 4 13
594 166.67 humidity 70.0 4320 < th dose independent rect. 20 1
606 166.67 humidity 70.0 4320 < th dose dependent rect. 20 1
622 166.70 wind 7.0 90 < th dose dependent rect. 7 18
638 166.80 wind 9.0 4320 > th dose independent sin 2 NA
663 166.94 wind 9.0 4320 < th dose independent rect. 13 2
665 166.94 radiation 10.0 720 < th dose dependent rect. 21 9
683 167.07 wind 1.0 720 > th dose independent rect. 9 9
695 167.12 wind 1.0 90 < th dose independent rect. 11 1
702 167.13 humidity 50.0 4320 > th dose independent rect. 16 1
703 167.13 atmosphere 1010.0 10 < th dose independent rect. 4 8
715 167.19 wind 9.0 4320 < th dose independent sin 2 NA
727 167.24 wind 1.0 10 < th dose independent rect. 11 1
737 167.29 wind 9.0 4320 > th dose dependent sin 2 NA
764 167.50 radiation 10.0 720 < th dose independent rect. 21 9
771 167.54 radiation 1.0 10 > th dose independent rect. 17 1
772 167.54 radiation 1.0 270 < th dose independent rect. 8 1
774 167.54 radiation 1.0 270 < th dose dependent rect. 8 1
786 167.60 radiation 40.0 30 > th dose dependent rect. 11 1
822 167.66 wind 5.0 90 < th dose independent rect. 7 18
924 167.96 humidity 60.0 270 > th dose independent rect. 4 9