Os03g0315400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Typical P-type R2R3 Myb protein (Fragment).
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Os03g0315400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Typical P-type R2R3 Myb protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 232.12 | 0.716 | 8.28 | -1.22 | 1.35 | -0.345 | 1.42 | -6.18 | 0.775 | 20.6 | 30.25 | 1235 | -- | -- |
| 234.8 | 0.714 | 8.15 | -0.161 | 1.3 | -0.934 | 1.17 | -- | 0.829 | 20.5 | 29.81 | 1234 | -- | -- |
| 238.59 | 0.719 | 8.28 | -1.24 | 1.34 | -0.345 | -- | -6 | 0.778 | 20.5 | 30.6 | 1267 | -- | -- |
| 240.31 | 0.722 | 8.16 | -0.198 | 1.36 | -1.03 | -- | -- | 0.795 | 20.5 | 29.81 | 1260 | -- | -- |
| 337.84 | 0.856 | 8.28 | -1.59 | -- | -0.156 | -- | -6.96 | 0.731 | -- | 29.17 | 1379 | -- | -- |
| 286.05 | 0.793 | 8.11 | -0.454 | 1.33 | -- | 1.37 | -- | 0.977 | 20.1 | -- | -- | -- | -- |
| 291.71 | 0.8 | 8.11 | -0.492 | 1.33 | -- | -- | -- | 0.978 | 20.1 | -- | -- | -- | -- |
| 342.41 | 0.862 | 8.12 | -0.235 | -- | -0.95 | -- | -- | 0.773 | -- | 30.2 | 1357 | -- | -- |
| 241.45 | 0.724 | 8.15 | -- | 1.36 | -1.06 | -- | -- | 0.801 | 20.5 | 29.7 | 1251 | -- | -- |
| 388.68 | 0.921 | 8.08 | -0.504 | -- | -- | -- | -- | 0.962 | -- | -- | -- | -- | -- |
| 298.1 | 0.808 | 8.1 | -- | 1.33 | -- | -- | -- | 1.03 | 20 | -- | -- | -- | -- |
| 343.85 | 0.864 | 8.12 | -- | -- | -0.98 | -- | -- | 0.793 | -- | 30.18 | 1360 | -- | -- |
| 395.39 | 0.928 | 8.07 | -- | -- | -- | -- | -- | 1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 220.45 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 18 | 224.47 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 39 | 228.84 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 49 | 230.18 | temperature | 25.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 54 | 230.32 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 66 | 232.20 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 68 | 232.29 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 69 | 232.30 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 76 | 232.51 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 3 |
| 77 | 232.62 | radiation | 20.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 79 | 232.62 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 96 | 232.90 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 13 | 20 |
| 110 | 233.22 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 114 | 233.30 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 140 | 233.48 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 142 | 233.55 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 148 | 233.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 154 | 233.67 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 14 |
| 156 | 233.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 157 | 233.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 168 | 233.89 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 16 | 19 |
| 205 | 234.20 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 293 | 234.67 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 297 | 234.72 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 319 | 234.83 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 18 |
| 354 | 234.97 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 364 | 235.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 389 | 235.21 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 485 | 235.29 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 486 | 235.33 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 495 | 235.44 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 527 | 235.70 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 529 | 235.77 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 541 | 235.78 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 543 | 235.82 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 576 | 236.04 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 584 | 236.12 | temperature | 30.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 611 | 236.39 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 648 | 236.48 | temperature | 30.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 661 | 236.67 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 670 | 236.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 672 | 236.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 677 | 236.77 | radiation | 20.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 683 | 236.80 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 12 |
| 693 | 236.90 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 728 | 237.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 752 | 237.24 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 779 | 237.28 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 789 | 237.28 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 791 | 237.29 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 807 | 237.29 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 822 | 237.31 | radiation | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 830 | 237.31 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 832 | 237.31 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 877 | 237.42 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 889 | 237.58 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 890 | 237.58 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 891 | 237.58 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 896 | 237.61 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 903 | 237.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 906 | 237.66 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 9 |
| 914 | 237.75 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 915 | 237.78 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 920 | 237.81 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 18 | 14 |
| 934 | 237.95 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 10 |
| 964 | 238.09 | radiation | 40.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 968 | 238.12 | radiation | 1.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 969 | 238.13 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 979 | 238.19 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 981 | 238.20 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 984 | 238.24 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 991 | 238.27 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |