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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0298400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Myb, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.68 (0.0972) R2 : 0.22
β1 : 1.84 (0.894) R2dD : 0.653 R2D : -0.742
β2 : -- (--) R2dC : -- R2C : --
β3 : -5.49 (3.55) R2dE : 2.47 R2E : -4.03
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 67.7 (33.9) R2dD*E : 4.61 R2D*E : -2.74
γ1 : 0.15 (0.0562) R2dN8 : 0.0164 R2N8 : -0.11
σ : 0.491
deviance : 111.08
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.37
memory length : 1493
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.97
open length of G : 1.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.58 0.494 2.68 1.87 0.108 -5.46 0.0403 67.4 0.154 20.7 30.33 1483 7.97 1.02
140.73 0.557 2.88 0.129 0.106 -0.114 0.023 -- 0.102 21.3 28.7 85 6.2 1.79
110.42 0.489 2.69 1.84 0.107 -5.48 -- 67.6 0.152 20.8 30.39 1501 7.96 1.02
140.71 0.552 2.88 0.129 0.106 -0.113 -- -- 0.102 21.3 28.7 85 6.82 1.78
111.08 0.491 2.68 1.84 -- -5.49 -- 67.7 0.15 -- 30.37 1493 7.97 1.02
140.74 0.556 2.88 0.129 0.107 -- 0.0248 -- 0.102 21.2 -- -- -- --
140.74 0.556 2.88 0.128 0.107 -- -- -- 0.102 21.3 -- -- -- --
141.32 0.554 2.88 0.13 -- -0.16 -- -- 0.0997 -- 28.42 70 6.63 2.25
141.15 0.553 2.89 -- 0.105 -0.0987 -- -- 0.0901 21.4 28.75 72 6.67 2.15
141.41 0.556 2.88 0.129 -- -- -- -- 0.102 -- -- -- -- --
141.17 0.556 2.89 -- 0.107 -- -- -- 0.088 21.4 -- -- -- --
141.77 0.555 2.89 -- -- -0.137 -- -- 0.086 -- 28.4 60 6.65 2.43
141.84 0.556 2.88 -- -- -- -- -- 0.0875 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.49 temperature 30.0 1440 > th dose dependent rect. 8 1
29 117.48 temperature 30.0 4320 > th dose independent rect. 8 1
57 119.56 temperature 30.0 4320 < th dose independent rect. 4 5
59 119.74 temperature 30.0 4320 < th dose independent rect. 7 2
60 119.79 temperature 30.0 4320 < th dose independent rect. 19 14
65 120.17 temperature 30.0 4320 < th dose independent rect. 1 8
71 121.36 wind 1.0 1440 < th dose dependent rect. 7 1
101 125.06 wind 1.0 1440 < th dose independent rect. 7 1
118 125.86 wind 1.0 1440 > th dose independent rect. 6 2
166 128.23 wind 1.0 10 < th dose independent rect. 2 1
177 128.68 humidity 90.0 10 > th dose dependent rect. 2 1
178 128.70 radiation 40.0 1440 < th dose independent rect. 4 5
201 129.01 radiation 40.0 1440 < th dose independent rect. 17 16
202 129.04 temperature 20.0 10 > th dose dependent rect. 2 1
204 129.05 wind 3.0 10 < th dose dependent rect. 2 1
205 129.09 humidity 90.0 10 > th dose independent rect. 2 1
215 129.14 temperature 20.0 10 > th dose independent rect. 2 1
229 129.20 temperature 25.0 10 < th dose independent rect. 2 1
235 129.24 atmosphere 1000.0 10 > th dose independent rect. 2 1
252 129.26 atmosphere 1015.0 10 < th dose dependent rect. 2 1
256 129.29 temperature 10.0 10 > th dose independent rect. 2 1
259 129.29 humidity 50.0 10 > th dose independent rect. 2 1
263 129.29 atmosphere 1010.0 10 < th dose independent rect. 2 1
265 129.29 radiation 1.0 10 < th dose independent rect. 2 1
270 129.29 precipitation 0.1 10 < th dose independent rect. 2 1
271 129.29 temperature 10.0 10 > th dose independent rect. 3 23
273 129.29 radiation 1.0 10 < th dose dependent rect. 2 1
278 129.29 precipitation 0.1 10 < th dose dependent rect. 2 1
299 129.42 atmosphere 995.0 10 > th dose dependent rect. 2 1
304 129.46 temperature 30.0 4320 > th dose dependent sin 8 NA
321 129.51 temperature 30.0 4320 > th dose independent sin 9 NA
346 129.53 radiation 40.0 1440 > th dose independent rect. 8 1
365 129.55 radiation 40.0 1440 < th dose independent rect. 1 8
373 129.59 temperature 30.0 30 < th dose dependent rect. 2 1
376 129.61 radiation 40.0 1440 < th dose independent rect. 7 2
386 129.66 radiation 40.0 1440 < th dose independent rect. 21 12
405 129.84 temperature 30.0 4320 < th dose independent sin 9 NA
406 129.89 precipitation 0.1 30 < th dose independent rect. 3 23
407 129.89 precipitation 0.1 30 < th dose dependent rect. 3 23
412 129.99 wind 1.0 30 > th dose independent rect. 2 1
432 130.28 atmosphere 995.0 30 > th dose independent rect. 3 23
434 130.31 wind 9.0 30 < th dose independent rect. 3 23
475 130.53 wind 1.0 1440 < th dose dependent rect. 4 4
498 130.69 radiation 1.0 4320 < th dose dependent rect. 3 1
503 130.74 wind 9.0 1440 < th dose independent rect. 3 1
504 130.74 temperature 10.0 1440 > th dose independent rect. 3 1
507 130.74 temperature 30.0 1440 < th dose independent rect. 3 1
511 130.74 humidity 50.0 1440 > th dose independent rect. 3 1
520 130.74 atmosphere 995.0 1440 > th dose independent rect. 3 1
521 130.74 radiation 1.0 1440 < th dose independent rect. 3 1
541 130.74 temperature 10.0 1440 > th dose independent rect. 4 23
567 130.95 radiation 1.0 90 < th dose independent rect. 14 1
568 130.95 radiation 1.0 90 < th dose dependent rect. 14 1
580 131.12 humidity 50.0 30 > th dose independent rect. 3 23
584 131.15 radiation 10.0 4320 < th dose independent rect. 16 15
591 131.20 radiation 10.0 4320 > th dose independent rect. 16 15
595 131.25 radiation 30.0 4320 > th dose dependent rect. 8 1
628 131.34 radiation 30.0 4320 > th dose dependent rect. 15 18
689 131.52 wind 1.0 10 > th dose independent sin 17 NA
707 131.62 wind 1.0 1440 < th dose dependent rect. 4 8
714 131.70 humidity 70.0 1440 > th dose independent rect. 8 1
727 131.87 radiation 10.0 4320 > th dose dependent rect. 16 15
770 132.12 radiation 10.0 4320 > th dose independent rect. 17 1
884 132.45 radiation 10.0 4320 > th dose dependent rect. 6 1
926 132.51 radiation 10.0 4320 < th dose independent sin 13 NA
944 132.52 temperature 30.0 4320 > th dose dependent no NA NA