Os01g0128000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os01g0128000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.7 | 0.617 | 3.28 | -0.447 | 0.446 | 3.29 | 0.887 | 8.34 | -0.16 | 1.52 | 0.1688 | 4285 | -- | -- |
| 239.63 | 0.727 | 3.12 | 0.219 | 0.168 | 0.196 | 0.472 | -- | -0.185 | 5.68 | 0.1688 | 4285 | -- | -- |
| 173.71 | 0.614 | 3.28 | -0.445 | 0.287 | 3.32 | -- | 8.53 | -0.163 | 2.18 | 0.08987 | 4332 | -- | -- |
| 209.74 | 0.675 | 3.1 | 0.42 | 0.295 | 1.35 | -- | -- | -0.0545 | 6.92 | 1.44 | 4445 | -- | -- |
| 175.74 | 0.617 | 3.28 | -0.401 | -- | 3.34 | -- | 8.35 | -0.152 | -- | 0.1021 | 4378 | -- | -- |
| 241.44 | 0.728 | 3.12 | 0.217 | 0.254 | -- | 0.392 | -- | -0.194 | 2.55 | -- | -- | -- | -- |
| 241.98 | 0.728 | 3.13 | 0.207 | 0.255 | -- | -- | -- | -0.196 | 2.29 | -- | -- | -- | -- |
| 197.09 | 0.654 | 3.07 | 0.651 | -- | 2.05 | -- | -- | 0.103 | -- | 1.233 | 2962 | -- | -- |
| 204.74 | 0.666 | 3.07 | -- | 0.0822 | 1.8 | -- | -- | 0.0376 | 6.78 | 2.119 | 2970 | -- | -- |
| 245.82 | 0.733 | 3.12 | 0.218 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 243.1 | 0.729 | 3.13 | -- | 0.259 | -- | -- | -- | -0.219 | 2.31 | -- | -- | -- | -- |
| 205.36 | 0.667 | 3.07 | -- | -- | 1.84 | -- | -- | 0.0614 | -- | 2.15 | 2973 | -- | -- |
| 247.07 | 0.734 | 3.13 | -- | -- | -- | -- | -- | -0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.05 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 9 | 169.16 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 10 | 169.24 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 11 | 169.32 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 12 |
| 13 | 169.63 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 25 | 169.71 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 26 | 169.72 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 44 | 169.85 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 53 | 169.91 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 101 | 170.13 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 18 | NA |
| 114 | 170.16 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 133 | 170.22 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 168 | 170.28 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 19 | NA |
| 198 | 170.33 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 277 | 170.46 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 278 | 170.46 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 290 | 170.47 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 293 | 170.47 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 334 | 170.51 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 340 | 170.51 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 341 | 170.52 | atmosphere | 1010 | 43200 | < th | dose independent | no | NA | NA |
| 358 | 170.53 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 359 | 170.53 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 377 | 170.54 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 394 | 170.56 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 465 | 170.62 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 505 | 170.65 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 586 | 170.72 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 601 | 170.74 | atmosphere | 1010 | 43200 | > th | dose independent | no | NA | NA |
| 606 | 170.74 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 618 | 170.75 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 629 | 170.76 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 634 | 170.77 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 638 | 170.77 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 687 | 170.80 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 698 | 170.81 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 709 | 170.82 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 715 | 170.82 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 7 | 17 |
| 727 | 170.84 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 806 | 170.89 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 7 | 12 |
| 894 | 170.95 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 21 | NA |
| 992 | 171.01 | humidity | 50 | 43200 | > th | dose independent | rect. | 9 | 4 |