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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0688200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Typical P-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.43 (0.0449) R2 : 0.64
β1 : 1.58 (0.164) R2dD : 0.0775 R2D : 0.0646
β2 : 1.68 (0.136) R2dC : 0.166 R2C : -0.209
β3 : 3.33 (0.127) R2dE : 0.731 R2E : 0.376
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.695 (0.0959) R2dN8 : 0.0555 R2N8 : 0.00374
σ : 0.839
deviance : 324.43
__
_____
C
peak time of C : 18.4
E
wheather : radiation
threshold : 12.07
memory length : 23
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 0.891
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
311.35 0.829 5.44 1.55 1.65 3.33 0.427 -1.83 0.683 18.4 11.91 23 0.918 --
317.52 0.83 5.42 1.58 1.78 3.62 1.56 -- 0.655 17.1 13.45 18 1.55 --
311.71 0.822 5.44 1.55 1.65 3.34 -- -1.96 0.681 18.3 12.12 23 0.995 --
324.43 0.839 5.43 1.58 1.68 3.33 -- -- 0.695 18.4 12.07 23 0.891 --
359.49 0.888 5.41 1.66 -- 2.47 -- -1.75 0.618 -- 4.212 23 2.61 --
427.94 0.97 5.46 1.59 2.44 -- -1.42 -- 0.523 0.75 -- -- -- --
436.44 0.978 5.46 1.64 2.45 -- -- -- 0.531 0.708 -- -- -- --
370.27 0.896 5.4 1.64 -- 2.44 -- -- 0.648 -- 6.29 18 3.12 --
391.33 0.921 5.46 -- 1.62 3.34 -- -- 0.555 18.3 11.43 23 0.944 --
810.58 1.33 5.42 1.73 -- -- -- -- 0.575 -- -- -- -- --
507.38 1.05 5.5 -- 2.47 -- -- -- 0.349 0.739 -- -- -- --
438.45 0.975 5.44 -- -- 2.49 -- -- 0.471 -- 10 18 3.25 --
889.38 1.39 5.46 -- -- -- -- -- 0.383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 309.83 temperature 25.0 90 < th dose independent rect. 23 6
2 315.85 radiation 10.0 30 < th dose dependent sin 7 NA
8 322.22 temperature 30.0 90 < th dose dependent rect. 23 6
10 322.67 temperature 25.0 270 < th dose independent rect. 23 4
14 326.23 temperature 25.0 90 < th dose independent rect. 21 8
15 326.67 radiation 1.0 30 > th dose independent sin 5 NA
17 326.99 temperature 30.0 270 < th dose dependent rect. 23 4
22 327.80 radiation 1.0 30 < th dose independent sin 5 NA
25 328.04 humidity 60.0 30 > th dose independent rect. 12 17
29 328.50 radiation 1.0 90 > th dose independent sin 7 NA
31 328.73 radiation 1.0 30 > th dose independent rect. 5 7
44 329.04 humidity 50.0 90 > th dose dependent rect. 12 17
58 329.44 wind 9.0 30 < th dose independent rect. 12 17
61 329.56 atmosphere 995.0 30 > th dose independent rect. 12 17
68 330.10 temperature 25.0 90 < th dose independent rect. 19 10
70 330.45 wind 9.0 30 < th dose independent rect. 5 7
71 330.58 precipitation 0.1 30 < th dose independent rect. 5 7
72 330.58 precipitation 0.1 30 < th dose dependent rect. 5 7
73 330.73 temperature 10.0 30 > th dose independent rect. 5 7
75 330.73 atmosphere 995.0 30 > th dose independent rect. 5 7
76 330.73 atmosphere 1015.0 30 < th dose independent rect. 5 7
77 330.73 temperature 10.0 30 > th dose independent rect. 12 17
86 331.59 humidity 60.0 90 > th dose dependent rect. 23 6
95 331.94 precipitation 0.1 270 < th dose independent rect. 4 18
96 331.94 precipitation 0.1 270 < th dose dependent rect. 4 18
98 332.23 humidity 50.0 270 > th dose dependent rect. 21 7
106 332.60 atmosphere 1015.0 270 < th dose independent rect. 4 18
115 333.37 radiation 1.0 90 < th dose dependent rect. 23 7
116 333.55 radiation 10.0 30 < th dose dependent rect. 23 18
118 333.63 radiation 40.0 30 < th dose independent rect. 12 17
124 333.98 radiation 1.0 90 < th dose independent rect. 23 7
127 334.17 precipitation 0.1 30 < th dose independent rect. 12 17
128 334.17 precipitation 0.1 30 < th dose dependent rect. 12 17
133 334.31 temperature 10.0 270 > th dose independent rect. 22 6
135 334.31 humidity 50.0 270 > th dose independent rect. 22 6
138 334.31 atmosphere 995.0 270 > th dose independent rect. 22 6
144 334.31 temperature 10.0 270 > th dose independent rect. 4 18
150 334.34 temperature 10.0 270 > th dose dependent rect. 16 7
152 334.43 wind 9.0 270 < th dose independent rect. 22 6
156 334.57 atmosphere 995.0 270 > th dose independent rect. 10 18
167 335.07 radiation 1.0 90 < th dose independent rect. 23 17
171 335.18 radiation 1.0 90 < th dose dependent rect. 23 14
182 335.56 wind 9.0 270 < th dose dependent rect. 4 6
185 335.76 radiation 1.0 90 < th dose independent rect. 23 14
187 335.82 precipitation 0.1 270 < th dose independent rect. 22 6
188 335.82 precipitation 0.1 270 < th dose dependent rect. 22 6
196 336.16 temperature 10.0 270 > th dose dependent rect. 15 9
201 336.26 temperature 10.0 270 > th dose independent rect. 10 18
207 336.40 humidity 50.0 270 > th dose independent rect. 4 6
216 336.80 wind 9.0 270 < th dose independent rect. 10 18
219 337.08 wind 9.0 270 < th dose independent rect. 4 18
223 337.23 humidity 50.0 270 > th dose independent rect. 23 16
253 338.01 atmosphere 995.0 270 > th dose independent rect. 23 16
260 338.37 wind 9.0 270 < th dose independent rect. 23 16
265 338.53 humidity 50.0 30 > th dose independent rect. 5 7
270 338.87 precipitation 0.1 270 < th dose independent rect. 15 8
271 338.87 precipitation 0.1 270 < th dose dependent rect. 15 8
299 339.45 humidity 50.0 270 > th dose dependent rect. 23 4
316 339.66 temperature 10.0 270 > th dose independent rect. 15 8
317 339.66 temperature 10.0 270 > th dose independent rect. 23 16
325 339.94 wind 9.0 270 < th dose independent rect. 15 8
326 339.96 radiation 10.0 10 < th dose dependent rect. 1 16
339 340.45 wind 1.0 270 > th dose independent rect. 15 8
353 340.99 humidity 50.0 270 > th dose independent rect. 10 18
362 341.37 precipitation 0.1 270 < th dose independent rect. 3 8
363 341.37 precipitation 0.1 270 < th dose dependent rect. 3 8
368 341.57 precipitation 0.1 270 < th dose independent rect. 10 18
369 341.57 precipitation 0.1 270 < th dose dependent rect. 10 18
371 341.65 wind 1.0 30 > th dose independent rect. 5 7
411 342.15 temperature 30.0 30 < th dose independent rect. 12 17
413 342.23 temperature 25.0 90 < th dose independent rect. 1 4
429 342.72 radiation 40.0 270 < th dose independent rect. 15 8
435 342.92 atmosphere 1015.0 270 < th dose independent rect. 23 5
455 343.21 radiation 1.0 30 < th dose independent rect. 3 13
457 343.26 atmosphere 1015.0 270 < th dose independent rect. 15 8
461 343.40 precipitation 0.1 270 < th dose independent rect. 23 16
462 343.40 precipitation 0.1 270 < th dose dependent rect. 23 16
469 343.59 radiation 1.0 30 < th dose dependent rect. 3 13
472 343.64 temperature 30.0 270 < th dose independent rect. 4 5
474 343.69 temperature 10.0 270 > th dose independent rect. 3 8
475 343.69 atmosphere 995.0 270 > th dose independent rect. 3 8
476 343.69 atmosphere 1015.0 270 < th dose independent rect. 3 8
480 343.73 radiation 1.0 30 < th dose independent rect. 1 15
485 343.84 wind 9.0 270 < th dose independent rect. 3 8
504 344.28 humidity 50.0 270 > th dose independent rect. 3 8
506 344.33 wind 7.0 270 < th dose independent rect. 17 16
514 344.58 radiation 1.0 30 < th dose dependent rect. 3 11
521 344.78 temperature 30.0 90 < th dose dependent rect. 1 4
538 345.26 atmosphere 1015.0 270 < th dose independent rect. 23 16
542 345.40 radiation 1.0 30 < th dose dependent rect. 3 3
551 345.80 radiation 1.0 30 < th dose independent rect. 3 3
555 345.84 precipitation 0.1 270 < th dose independent rect. 17 16
556 345.84 precipitation 0.1 270 < th dose dependent rect. 17 16
558 345.87 radiation 1.0 30 < th dose independent rect. 3 11
561 345.98 radiation 1.0 30 < th dose independent rect. 1 13
564 346.00 radiation 1.0 30 < th dose dependent rect. 3 9
572 346.12 wind 9.0 270 < th dose dependent rect. 22 6
576 346.26 wind 1.0 90 > th dose independent rect. 5 18
577 346.27 radiation 40.0 270 < th dose independent rect. 4 5
578 346.30 radiation 1.0 30 < th dose independent rect. 1 5
579 346.31 atmosphere 1015.0 90 < th dose dependent rect. 1 4
640 347.13 radiation 1.0 30 < th dose independent rect. 1 11
646 347.27 radiation 1.0 30 < th dose independent rect. 3 9
650 347.35 precipitation 0.1 90 < th dose independent rect. 4 23
651 347.35 precipitation 0.1 90 < th dose dependent rect. 4 23
652 347.37 temperature 10.0 10 > th dose dependent rect. 5 22
662 347.56 wind 9.0 90 < th dose independent rect. 3 1
663 347.56 temperature 10.0 90 > th dose independent rect. 3 1
665 347.56 temperature 30.0 90 < th dose independent rect. 3 1
666 347.56 humidity 50.0 90 > th dose independent rect. 3 1
669 347.56 atmosphere 995.0 90 > th dose independent rect. 3 1
670 347.56 atmosphere 1010.0 90 < th dose independent rect. 3 1
672 347.56 radiation 1.0 90 < th dose independent rect. 3 1
678 347.56 temperature 10.0 90 > th dose independent rect. 4 23
679 347.56 radiation 1.0 90 < th dose dependent rect. 3 1
689 347.60 temperature 10.0 10 > th dose dependent rect. 5 7
693 347.68 radiation 1.0 30 < th dose dependent rect. 1 5
695 347.70 atmosphere 995.0 270 > th dose independent rect. 9 8
720 348.00 radiation 1.0 30 < th dose dependent rect. 1 11
738 348.30 precipitation 0.1 90 < th dose independent rect. 3 1
739 348.30 precipitation 0.1 90 < th dose dependent rect. 3 1
755 348.54 atmosphere 1015.0 270 < th dose dependent rect. 23 4
757 348.62 atmosphere 1015.0 30 < th dose independent rect. 5 22
761 348.66 precipitation 0.1 10 < th dose independent rect. 5 22
762 348.66 precipitation 0.1 10 < th dose dependent rect. 5 22
779 348.77 wind 9.0 270 < th dose independent rect. 9 8
829 349.00 atmosphere 995.0 30 > th dose dependent rect. 12 17
838 349.14 radiation 1.0 10 > th dose dependent sin 9 NA
839 349.17 humidity 50.0 90 > th dose dependent rect. 3 1
854 349.37 atmosphere 995.0 90 > th dose independent rect. 5 18
855 349.38 temperature 15.0 30 > th dose independent rect. 5 20
860 349.41 temperature 10.0 270 > th dose independent rect. 9 8
863 349.41 atmosphere 1015.0 270 < th dose independent rect. 9 8
865 349.41 temperature 10.0 270 > th dose independent rect. 17 16
866 349.42 humidity 50.0 270 > th dose dependent rect. 4 6
869 349.47 wind 9.0 90 < th dose dependent rect. 3 1
904 349.70 atmosphere 1015.0 30 < th dose independent rect. 12 17
916 349.88 temperature 10.0 30 > th dose dependent rect. 5 20
923 349.98 atmosphere 1015.0 30 < th dose dependent rect. 3 2
942 350.25 wind 1.0 90 > th dose independent rect. 1 4
945 350.28 temperature 10.0 90 > th dose dependent rect. 3 1
961 350.44 temperature 10.0 90 > th dose independent rect. 1 4
964 350.44 humidity 50.0 90 > th dose independent rect. 1 4
967 350.44 atmosphere 995.0 90 > th dose independent rect. 1 4
968 350.44 atmosphere 1010.0 90 < th dose independent rect. 1 4
974 350.48 wind 9.0 90 < th dose independent rect. 1 4
983 350.61 temperature 10.0 1440 > th dose independent rect. 5 8
986 350.61 atmosphere 995.0 1440 > th dose independent rect. 5 8
987 350.61 temperature 10.0 1440 > th dose independent rect. 13 16