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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0684000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor MYB21 (Myb-related protein 21) (AtMYB21) (Myb homolog 3) (AtMyb3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.71 (0.0694) R2 : 0.484
β1 : 3.47 (0.238) R2dD : 0.505 R2D : -0.162
β2 : 1.6 (0.118) R2dC : 0.231 R2C : 0.119
β3 : -4.66 (0.44) R2dE : 0.599 R2E : -0.765
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.34 (1.73) R2dD*E : 0.154 R2D*E : -0.117
γ1 : 1.49 (0.112) R2dN8 : 0.355 R2N8 : 0.0357
σ : 0.851
deviance : 333.65
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_____
C
peak time of C : 2.53
E
wheather : radiation
threshold : 1.993
memory length : 4321
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 24
open length of G : 5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
329.53 0.853 5.72 3.5 1.58 -4.87 1.14 -10.5 1.49 2.58 1.832 4321 24 5.02
376.62 0.904 5.72 3.47 1.52 -3.18 1.18 -- 1.3 2.62 2.233 4322 24 5.27
333.65 0.851 5.71 3.47 1.6 -4.66 -- -9.34 1.49 2.53 1.993 4321 24 5
358.77 0.882 5.72 2.89 1.42 -3.13 -- -- 1.3 2.23 1.765 4324 23.9 5.34
422.55 0.957 5.8 3.78 -- -4.49 -- -9.18 1.52 -- 6.975 5755 0.117 5.07
425.25 0.967 5.54 1.52 1.18 -- 0.07 -- 1.11 2.8 -- -- -- --
425.27 0.966 5.54 1.52 1.18 -- -- -- 1.11 2.79 -- -- -- --
401.47 0.933 5.65 3.09 -- -2.81 -- -- 1.23 -- 1.584 8626 0.137 5.02
477.4 1.02 5.59 -- 1.62 -0.479 -- -- 0.878 2.53 0.1099 4328 23.9 5.4
505.72 1.05 5.53 1.57 -- -- -- -- 1.14 -- -- -- -- --
486.11 1.03 5.58 -- 1.21 -- -- -- 0.944 2.8 -- -- -- --
459.08 0.998 5.41 -- -- -2.03 -- -- 1.13 -- 0.1834 11875 5.83 3.49
570.7 1.12 5.57 -- -- -- -- -- 0.97 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 333.68 humidity 90 14400 > th dose independent rect. 23 9
2 334.75 humidity 90 14400 > th dose dependent rect. 3 5
7 335.85 humidity 90 14400 > th dose dependent rect. 4 3
10 336.94 wind 1 43200 > th dose independent rect. 2 1
11 337.00 humidity 90 14400 > th dose independent rect. 23 2
16 338.11 humidity 90 14400 > th dose dependent rect. 24 9
27 339.07 wind 1 43200 < th dose independent rect. 2 1
33 339.31 humidity 90 14400 > th dose independent rect. 22 6
39 339.79 humidity 90 14400 > th dose dependent rect. 24 1
42 340.22 radiation 1 4320 < th dose dependent rect. 24 5
55 340.74 humidity 90 14400 > th dose dependent rect. 5 1
81 341.81 humidity 90 14400 > th dose dependent sin 7 NA
100 342.70 humidity 90 14400 > th dose independent sin 9 NA
105 342.87 radiation 1 4320 < th dose dependent rect. 3 2
126 343.31 humidity 90 14400 < th dose independent rect. 23 2
131 343.54 humidity 90 14400 < th dose independent rect. 23 9
138 343.79 radiation 1 14400 < th dose dependent rect. 19 10
148 344.18 humidity 90 14400 > th dose dependent rect. 23 3
177 345.18 radiation 1 14400 < th dose independent rect. 18 11
198 345.77 humidity 90 14400 > th dose independent rect. 5 1
217 346.42 wind 1 43200 < th dose dependent rect. 2 1
230 346.71 temperature 20 1440 < th dose independent rect. 5 1
257 347.41 humidity 90 14400 < th dose independent rect. 22 6
266 347.60 radiation 1 14400 < th dose independent rect. 18 8
274 347.80 radiation 1 14400 < th dose independent rect. 18 1
352 349.23 radiation 40 43200 < th dose dependent rect. 22 7
371 349.61 wind 9 43200 > th dose independent rect. 16 1
378 349.70 radiation 1 14400 > th dose independent rect. 18 1
438 350.73 radiation 40 43200 < th dose dependent rect. 24 5
440 350.76 humidity 90 14400 < th dose independent sin 9 NA
459 350.96 temperature 20 1440 > th dose independent rect. 5 2
586 353.37 humidity 90 14400 > th dose dependent no NA NA
642 354.36 atmosphere 1015 43200 < th dose independent rect. 18 1
655 354.63 atmosphere 1015 43200 > th dose independent rect. 16 4
660 354.66 atmosphere 1015 43200 > th dose dependent rect. 19 1
680 354.96 atmosphere 1015 43200 > th dose independent rect. 15 1
703 355.14 radiation 1 4320 < th dose dependent rect. 18 8
718 355.33 atmosphere 1015 43200 > th dose dependent rect. 15 1
719 355.35 radiation 1 4320 < th dose dependent rect. 18 1
727 355.43 radiation 1 4320 < th dose dependent rect. 18 14
752 355.62 wind 3 43200 < th dose dependent rect. 11 1
761 355.75 humidity 90 14400 > th dose dependent rect. 2 23
832 356.79 radiation 30 14400 > th dose independent rect. 7 1
851 356.89 wind 3 43200 > th dose independent rect. 13 1
862 357.07 temperature 20 4320 > th dose independent rect. 22 1
868 357.20 atmosphere 1015 43200 > th dose independent rect. 12 1
872 357.24 atmosphere 1015 43200 < th dose independent rect. 13 1
898 357.55 wind 3 43200 < th dose independent rect. 13 1
904 357.63 radiation 30 14400 > th dose dependent rect. 7 1
925 357.69 wind 1 43200 > th dose independent rect. 11 1
929 357.73 wind 1 43200 > th dose independent rect. 9 2
994 358.45 humidity 90 14400 > th dose independent no NA NA