BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0541300 Os12g0541300|J075145A22
(42 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0541300 Ferric reductase-like transmembrane component ... 90 4e-19
Os01g0835500 Similar to Respiratory burst oxidase protein 72 7e-14
Os05g0465800 Similar to RbohAp108 72 1e-13
Os01g0360200 Similar to Respiratory burst oxidase homolog 71 2e-13
Os05g0528000 Similar to RbohAOsp (Fragment) 68 1e-12
AK099714 68 1e-12
Os01g0734200 Similar to RbohAOsp (Fragment) 68 2e-12
Os09g0438000 Similar to RbohAOsp (Fragment) 65 9e-12
Os08g0453700 Similar to RbohAOsp (Fragment) 65 9e-12
>Os12g0541300 Ferric reductase-like transmembrane component family protein
Length = 42
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/42 (100%), Positives = 42/42 (100%)
Query: 1 NVQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
NVQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW
Sbjct: 1 NVQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
>Os01g0835500 Similar to Respiratory burst oxidase protein
Length = 843
Score = 72.4 bits (176), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/41 (68%), Positives = 35/41 (85%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
V+ AIYPGNV+++HM KP GFKYKSG Y++V C +VSPFEW
Sbjct: 535 VKAAIYPGNVLSLHMKKPPGFKYKSGMYLFVKCPDVSPFEW 575
>Os05g0465800 Similar to RbohAp108
Length = 819
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/41 (65%), Positives = 34/41 (82%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++ AIYPGNV++IHM KP FKYKSG Y++V C +VSPFEW
Sbjct: 510 IKAAIYPGNVLSIHMNKPSSFKYKSGMYMFVKCPDVSPFEW 550
>Os01g0360200 Similar to Respiratory burst oxidase homolog
Length = 905
Score = 71.2 bits (173), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 36/40 (90%)
Query: 3 QVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
+VA+YPGNV+A++M+KP GF+Y+SGQYI++ C VSP+EW
Sbjct: 599 KVAVYPGNVLALYMSKPPGFRYRSGQYIFIKCTAVSPYEW 638
>Os05g0528000 Similar to RbohAOsp (Fragment)
Length = 951
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++VAIYPGNV+ + M+KP F+YKSGQY++V C VSPFEW
Sbjct: 631 LKVAIYPGNVLTLQMSKPPTFRYKSGQYMFVQCPAVSPFEW 671
>AK099714
Length = 393
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 36/40 (90%)
Query: 3 QVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
+VA+YPGNV+A++M+KP GF+Y+SGQYI++ C VSP+EW
Sbjct: 87 KVAVYPGNVLALYMSKPPGFRYRSGQYIFIKCTAVSPYEW 126
>Os01g0734200 Similar to RbohAOsp (Fragment)
Length = 743
Score = 67.8 bits (164), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++VAIYPGNV+ + M+KP F+YKSGQY++V C VSPFEW
Sbjct: 423 LKVAIYPGNVLTLQMSKPPTFRYKSGQYMFVQCPAVSPFEW 463
>Os09g0438000 Similar to RbohAOsp (Fragment)
Length = 1007
Score = 65.5 bits (158), Expect = 9e-12, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 34/41 (82%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++V + PGNV+ I M+KP+GF+Y+SGQYI++ C +SPFEW
Sbjct: 690 LKVCLLPGNVLTITMSKPYGFRYRSGQYIFLQCPTISPFEW 730
>Os08g0453700 Similar to RbohAOsp (Fragment)
Length = 1033
Score = 65.5 bits (158), Expect = 9e-12, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 34/41 (82%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++V + PGNV+ I M+KP+GF+Y+SGQYI++ C +SPFEW
Sbjct: 716 LKVCLLPGNVLTITMSKPYGFRYRSGQYIFLQCPTISPFEW 756
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.140 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,510,428
Number of extensions: 35929
Number of successful extensions: 53
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 42
Length of database: 17,035,801
Length adjustment: 16
Effective length of query: 26
Effective length of database: 16,200,377
Effective search space: 421209802
Effective search space used: 421209802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)