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Os01g0835500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Respiratory burst oxidase protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0369) R2 : 0.656
β1 : -0.814 (0.135) R2dD : 0.0302 R2D : -0.0458
β2 : 1.8 (0.0913) R2dC : 0.327 R2C : 0.413
β3 : -2.5 (0.207) R2dE : 0.149 R2E : 0.113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.14 (0.0845) R2dN8 : 0.228 R2N8 : 0.029
σ : 0.669
deviance : 206.34
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C
peak time of C : 10.5
E
wheather : radiation
threshold : 2.76
memory length : 3002
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
189.43 0.647 11.8 -0.477 1.7 -3.33 0.86 -4.97 -0.935 10.6 1.388 1505 -- --
199.32 0.658 11.8 -0.806 1.84 -2.36 0.972 -- -1.15 10.4 2.872 3004 -- --
191.69 0.645 11.8 -0.414 1.57 -3.42 -- -5.29 -0.931 10.3 1.455 1530 -- --
206.34 0.669 11.8 -0.814 1.8 -2.5 -- -- -1.14 10.5 2.76 3002 -- --
259 0.754 11.8 -0.52 -- -1.64 -- -0.707 -0.743 -- 1.455 1530 -- --
261.76 0.758 11.7 -0.493 2.16 -- 1.33 -- -0.712 10.9 -- -- -- --
269.17 0.768 11.7 -0.438 2.15 -- -- -- -0.707 10.9 -- -- -- --
262.19 0.757 11.8 -0.529 -- -1.65 -- -- -0.747 -- 1.455 1530 -- --
222.66 0.695 11.8 -- 1.86 -2.18 -- -- -1.08 10.7 3.195 2986 -- --
557.17 1.1 11.8 -0.485 -- -- -- -- -0.722 -- -- -- -- --
274.23 0.775 11.7 -- 2.16 -- -- -- -0.658 10.9 -- -- -- --
268.36 0.763 11.8 -- -- -1.69 -- -- -0.691 -- 2.77 18 -- --
563.37 1.11 11.8 -- -- -- -- -- -0.668 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 180.28 humidity 50 720 > th dose dependent rect. 16 5
2 180.29 humidity 70 720 > th dose independent rect. 15 5
3 180.88 temperature 30 720 < th dose independent rect. 16 4
7 181.84 radiation 1 720 < th dose dependent rect. 14 13
10 181.95 humidity 50 720 > th dose dependent rect. 15 12
14 182.73 radiation 1 720 < th dose dependent rect. 7 20
15 182.81 radiation 1 720 < th dose dependent rect. 9 18
24 183.01 humidity 70 720 > th dose independent rect. 15 12
25 183.06 temperature 30 720 < th dose independent rect. 16 11
35 185.09 radiation 1 720 < th dose independent rect. 13 14
38 185.24 radiation 1 720 < th dose independent rect. 9 18
53 186.04 temperature 30 720 < th dose independent rect. 15 13
57 186.19 humidity 70 720 > th dose dependent rect. 19 1
82 188.12 radiation 1 720 < th dose dependent rect. 7 12
91 188.64 humidity 60 720 > th dose dependent sin 17 NA
98 188.76 humidity 80 720 < th dose independent rect. 12 10
100 188.85 radiation 1 720 < th dose dependent rect. 5 14
116 189.51 radiation 1 720 < th dose dependent rect. 13 6
128 189.79 humidity 60 720 > th dose dependent rect. 11 16
148 190.58 humidity 90 720 < th dose dependent rect. 16 8
156 191.06 temperature 25 720 > th dose dependent rect. 12 20
159 191.12 humidity 90 720 < th dose dependent sin 15 NA
171 191.43 temperature 25 720 > th dose dependent sin 14 NA
173 191.45 temperature 25 720 > th dose dependent rect. 12 12
185 191.85 humidity 70 720 > th dose independent sin 14 NA
188 191.92 humidity 80 720 > th dose independent rect. 11 11
190 191.99 radiation 1 1440 < th dose dependent sin 23 NA
217 192.41 temperature 25 1440 > th dose dependent rect. 13 6
226 192.51 temperature 25 1440 > th dose dependent rect. 13 4
232 192.58 temperature 25 1440 > th dose dependent rect. 11 8
247 192.78 temperature 25 1440 > th dose dependent rect. 13 1
252 192.86 radiation 1 720 > th dose independent rect. 11 8
262 192.86 radiation 1 1440 < th dose dependent rect. 7 23
263 192.88 temperature 25 1440 > th dose dependent rect. 15 2
278 192.99 radiation 1 720 < th dose independent rect. 8 11
287 193.06 radiation 1 720 < th dose independent rect. 13 6
291 193.08 radiation 1 720 > th dose independent rect. 11 19
298 193.14 temperature 25 1440 > th dose dependent sin 20 NA
331 193.41 radiation 1 1440 < th dose dependent rect. 5 19
341 193.45 humidity 70 720 > th dose dependent rect. 11 10
381 193.61 radiation 1 1440 < th dose dependent rect. 7 17
419 193.74 radiation 20 14400 > th dose dependent rect. 16 2
441 193.76 temperature 25 1440 > th dose dependent rect. 23 20
448 193.77 radiation 1 1440 < th dose dependent rect. 18 23
493 193.92 radiation 1 1440 < th dose dependent rect. 11 19
629 194.22 radiation 1 1440 < th dose dependent no NA NA
639 194.24 radiation 1 1440 < th dose dependent rect. 11 23
648 194.27 temperature 25 1440 > th dose dependent no NA NA
657 194.31 radiation 1 1440 < th dose dependent rect. 20 23
673 194.38 humidity 70 14400 > th dose independent rect. 19 1
693 194.43 temperature 25 1440 > th dose dependent rect. 18 23
720 194.51 radiation 1 1440 < th dose dependent rect. 11 13
748 194.59 humidity 70 720 < th dose independent sin 14 NA
783 194.73 humidity 70 14400 > th dose independent rect. 19 12
789 194.74 temperature 25 1440 > th dose dependent rect. 15 23
809 194.84 humidity 70 14400 < th dose independent rect. 18 13
838 194.97 humidity 90 720 < th dose dependent rect. 15 17
904 195.19 humidity 70 14400 < th dose independent rect. 18 2
917 195.23 radiation 1 4320 < th dose dependent rect. 16 1
971 195.37 humidity 70 720 > th dose dependent rect. 9 14