Os09g0438000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RbohAOsp (Fragment).
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Os09g0438000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RbohAOsp (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 266.49 | 0.767 | 8.08 | -1.52 | 2.01 | 2.15 | 3.99 | -6.43 | 0.372 | 6.2 | 28.82 | 1132 | -- | -- |
| 268.57 | 0.763 | 7.96 | -0.373 | 2.01 | 1.51 | 4.14 | -- | 0.39 | 6.24 | 27.94 | 1110 | -- | -- |
| 301.3 | 0.808 | 8.1 | -1.52 | 2.03 | 2.07 | -- | -6.09 | 0.257 | 5.74 | 28.29 | 1167 | -- | -- |
| 304.12 | 0.812 | 7.96 | -0.316 | 1.99 | 1.38 | -- | -- | 0.418 | 5.71 | 28.34 | 1167 | -- | -- |
| 507.11 | 1.05 | 8.07 | -1.02 | -- | 1.93 | -- | -3.84 | 0.421 | -- | 28.61 | 1250 | -- | -- |
| 357.65 | 0.887 | 7.98 | 0.038 | 2.05 | -- | 3.72 | -- | 0.301 | 5.71 | -- | -- | -- | -- |
| 388.01 | 0.922 | 7.99 | 0.0526 | 2.08 | -- | -- | -- | 0.282 | 5.27 | -- | -- | -- | -- |
| 507.16 | 1.05 | 7.99 | -0.307 | -- | 1.49 | -- | -- | 0.472 | -- | 28.43 | 1246 | -- | -- |
| 306.79 | 0.816 | 7.96 | -- | 2.02 | 1.36 | -- | -- | 0.42 | 5.7 | 28.4 | 1164 | -- | -- |
| 613.41 | 1.16 | 8.02 | 0.125 | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
| 388.09 | 0.922 | 7.99 | -- | 2.08 | -- | -- | -- | 0.277 | 5.27 | -- | -- | -- | -- |
| 509.52 | 1.05 | 7.98 | -- | -- | 1.44 | -- | -- | 0.515 | -- | 28.59 | 1245 | -- | -- |
| 613.82 | 1.16 | 8.02 | -- | -- | -- | -- | -- | 0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 260.61 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 9 |
| 3 | 260.90 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 6 | 261.58 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 17 | 264.04 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 27 | 265.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 5 |
| 28 | 265.51 | temperature | 30.0 | 720 | < th | dose independent | sin | 11 | NA |
| 43 | 266.69 | temperature | 30.0 | 720 | < th | dose independent | sin | 14 | NA |
| 47 | 267.04 | temperature | 25.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 60 | 268.07 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 65 | 268.36 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 95 | 270.06 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 16 |
| 102 | 270.38 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 18 |
| 107 | 270.63 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 16 |
| 116 | 271.15 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 155 | 272.62 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 156 | 272.64 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 207 | 275.07 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 7 |
| 226 | 275.68 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 227 | 275.74 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 10 |
| 228 | 275.75 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 13 |
| 237 | 276.05 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 255 | 276.58 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 257 | 276.64 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 267 | 276.85 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 5 |
| 283 | 277.42 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 306 | 277.61 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 319 | 277.70 | temperature | 30.0 | 720 | < th | dose independent | rect. | 6 | 19 |
| 320 | 277.73 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 24 | 6 |
| 322 | 277.76 | temperature | 30.0 | 720 | < th | dose independent | rect. | 22 | 21 |
| 342 | 278.16 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 350 | 278.32 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 12 |
| 373 | 278.73 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 13 |
| 374 | 278.78 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 377 | 278.79 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 380 | 278.84 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 387 | 278.97 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 388 | 278.97 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 17 |
| 390 | 278.98 | temperature | 30.0 | 720 | > th | dose independent | sin | 12 | NA |
| 391 | 278.99 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 400 | 279.05 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 415 | 279.27 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 423 | 279.42 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 428 | 279.47 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 5 |
| 439 | 279.56 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 459 | 279.66 | temperature | 30.0 | 720 | < th | dose independent | rect. | 4 | 15 |
| 509 | 279.88 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 526 | 280.10 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 530 | 280.14 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 536 | 280.20 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 581 | 280.43 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 583 | 280.45 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 587 | 280.49 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 594 | 280.55 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 9 | NA |
| 632 | 280.73 | temperature | 30.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 650 | 280.88 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 665 | 281.03 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 734 | 281.47 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 756 | 281.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 14 |
| 758 | 281.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 780 | 281.80 | temperature | 30.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 806 | 281.92 | temperature | 10.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 812 | 282.05 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 829 | 282.11 | humidity | 70.0 | 90 | > th | dose independent | rect. | 15 | 12 |
| 849 | 282.21 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 928 | 282.44 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 931 | 282.46 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 956 | 282.52 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 972 | 282.54 | radiation | 30.0 | 720 | < th | dose independent | rect. | 14 | 11 |
| 984 | 282.65 | temperature | 30.0 | 720 | < th | dose independent | rect. | 6 | 14 |