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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0541300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ferric reductase-like transmembrane component family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0344) R2 : 0.484
β1 : -1.08 (0.124) R2dD : 0.0898 R2D : 0.0986
β2 : 4.07 (0.386) R2dC : 2.45 R2C : -2.49
β3 : 5.24 (0.469) R2dE : 2.73 R2E : -2.27
β4 : -9.85 (1.23) R2dD*C : 0.679 R2D*C : -0.83
β5 : -13.9 (1.45) R2dD*E : 0.971 R2D*E : -0.518
γ1 : -0.185 (0.0729) R2dN8 : 0.0101 R2N8 : 0.0066
σ : 0.636
deviance : 182.96
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_____
C
peak time of C : 17.5
E
wheather : radiation
threshold : 0.8108
memory length : 723
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14
open length of G : 14

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
182.96 0.636 3.46 -1.08 4.07 5.24 -9.85 -13.9 -0.185 17.5 0.8108 723 14 14
235.85 0.715 3.48 -1.06 2.51 3.88 -1.21 -- -0.235 19 0.00614 930 11.7 15
218.2 0.688 3.4 -1.21 3.39 4.59 -- -5.13 -0.309 15.5 1.79 705 12.9 12
226.42 0.701 3.5 -1.1 2.68 3.94 -- -- -0.262 18.8 0.003272 845 12 15.4
239.09 0.72 3.39 -1.01 -- 1.33 -- -4.27 -0.0355 -- 20.02 3281 13.2 12.8
241.82 0.729 3.47 -1.47 0.644 -- -2.82 -- -0.4 0.17 -- -- -- --
276.12 0.778 3.46 -1.36 0.657 -- -- -- -0.386 23.8 -- -- -- --
264.92 0.758 3.37 -1.16 -- 1.87 -- -- 0.153 -- 10.01 3096 13 16.2
247.22 0.732 3.48 -- 2.92 4.58 -- -- -0.179 17.8 2.614e-06 811 10.9 15.5
303.26 0.814 3.45 -1.34 -- -- -- -- -0.378 -- -- -- -- --
324.66 0.843 3.43 -- 0.641 -- -- -- -0.235 23.7 -- -- -- --
306.12 0.815 3.34 -- -- 1.7 -- -- 0.179 -- 10.48 3111 11.9 16.5
350.48 0.874 3.41 -- -- -- -- -- -0.229 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 184.52 radiation 1.0 720 < th dose independent rect. 14 14
7 187.38 radiation 1.0 720 < th dose independent rect. 14 5
9 187.87 radiation 1.0 720 < th dose dependent rect. 14 14
25 190.00 radiation 1.0 720 < th dose dependent rect. 14 5
38 191.20 radiation 1.0 720 > th dose independent rect. 11 18
48 191.60 radiation 1.0 720 > th dose independent rect. 11 8
67 192.16 radiation 1.0 720 < th dose dependent rect. 16 1
109 193.69 radiation 1.0 720 < th dose independent rect. 16 1
116 194.20 radiation 1.0 720 < th dose independent sin 18 NA
162 195.78 radiation 1.0 1440 < th dose independent rect. 9 6
165 195.89 radiation 1.0 720 > th dose independent sin 18 NA
175 196.03 wind 5.0 720 > th dose independent rect. 17 1
176 196.04 radiation 1.0 1440 > th dose independent rect. 9 6
203 196.93 radiation 1.0 1440 < th dose independent rect. 9 4
205 196.93 radiation 1.0 1440 < th dose dependent rect. 9 4
214 197.16 precipitation 0.1 30 > th dose independent rect. 3 1
220 197.16 precipitation 0.1 30 > th dose dependent rect. 3 1
226 197.18 radiation 1.0 720 < th dose dependent sin 20 NA
314 199.21 wind 3.0 720 > th dose dependent rect. 17 1
471 202.88 radiation 1.0 720 < th dose independent rect. 23 20
474 202.91 radiation 1.0 1440 > th dose independent rect. 9 1
484 203.05 temperature 20.0 10 > th dose independent rect. 3 1
536 203.63 radiation 1.0 720 < th dose dependent rect. 23 19
723 205.06 wind 1.0 270 < th dose dependent rect. 24 1
731 205.10 radiation 1.0 1440 < th dose independent rect. 2 15
732 205.11 radiation 1.0 1440 < th dose independent rect. 20 21
959 206.52 radiation 1.0 720 < th dose independent rect. 21 23