BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0541300 Os12g0541300|J075145A22
(42 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47910.1 | chr5:19397585-19401768 FORWARD LENGTH=922 77 1e-15
AT5G51060.1 | chr5:20757484-20762175 REVERSE LENGTH=906 76 4e-15
AT1G09090.2 | chr1:2932743-2936495 FORWARD LENGTH=844 74 2e-14
AT1G64060.1 | chr1:23770266-23776317 FORWARD LENGTH=945 69 7e-13
AT5G07390.1 | chr5:2336063-2339728 REVERSE LENGTH=903 63 2e-11
AT4G25090.1 | chr4:12878930-12883599 REVERSE LENGTH=850 63 3e-11
AT3G45810.1 | chr3:16832883-16837569 REVERSE LENGTH=913 63 3e-11
AT4G11230.1 | chr4:6840791-6845587 REVERSE LENGTH=942 62 4e-11
AT5G60010.1 | chr5:24160456-24164755 FORWARD LENGTH=887 60 3e-10
AT1G19230.2 | chr1:6644189-6649149 FORWARD LENGTH=935 59 6e-10
>AT5G47910.1 | chr5:19397585-19401768 FORWARD LENGTH=922
Length = 921
Score = 77.4 bits (189), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/41 (70%), Positives = 37/41 (90%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++VA+YPGNV+++HMTKP GFKYKSGQ++ VNC VSPFEW
Sbjct: 619 IKVAVYPGNVLSLHMTKPQGFKYKSGQFMLVNCRAVSPFEW 659
>AT5G51060.1 | chr5:20757484-20762175 REVERSE LENGTH=906
Length = 905
Score = 75.9 bits (185), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/40 (70%), Positives = 36/40 (90%)
Query: 3 QVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
+VA+YPGNV+AIH+++P FKYKSGQY++VNC VSPFEW
Sbjct: 597 KVAVYPGNVLAIHLSRPQNFKYKSGQYMFVNCAAVSPFEW 636
>AT1G09090.2 | chr1:2932743-2936495 FORWARD LENGTH=844
Length = 843
Score = 73.6 bits (179), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/41 (63%), Positives = 37/41 (90%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++VA+YPGNV++++M+KP GFKY SGQYIY+NC +VSP +W
Sbjct: 542 LKVAVYPGNVLSLYMSKPKGFKYTSGQYIYINCSDVSPLQW 582
>AT1G64060.1 | chr1:23770266-23776317 FORWARD LENGTH=945
Length = 944
Score = 68.6 bits (166), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++VAIYPGNV+ + M+KP F+YKSGQY++V C VSPFEW
Sbjct: 630 LKVAIYPGNVLTLQMSKPTQFRYKSGQYMFVQCPAVSPFEW 670
>AT5G07390.1 | chr5:2336063-2339728 REVERSE LENGTH=903
Length = 902
Score = 63.2 bits (152), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++VA+ PGNV+++H+++P F+YKSGQY+Y+NC VS EW
Sbjct: 588 LKVAVLPGNVLSLHLSRPSNFRYKSGQYMYLNCSAVSTLEW 628
>AT4G25090.1 | chr4:12878930-12883599 REVERSE LENGTH=850
Length = 849
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 32/41 (78%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
+++A YPG V+ + M+KP FKY SGQY++VNC VSPFEW
Sbjct: 549 LKMAAYPGKVLTLQMSKPTNFKYMSGQYMFVNCPAVSPFEW 589
>AT3G45810.1 | chr3:16832883-16837569 REVERSE LENGTH=913
Length = 912
Score = 62.8 bits (151), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 33/41 (80%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++ +Y GNV+A++MTKP GFKYKSG Y++V C ++S FEW
Sbjct: 570 IKAIVYSGNVLALYMTKPQGFKYKSGMYMFVKCPDISKFEW 610
>AT4G11230.1 | chr4:6840791-6845587 REVERSE LENGTH=942
Length = 941
Score = 62.4 bits (150), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 3 QVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
+V IYPGNV+ + M+KP F YKSGQY++V C VS FEW
Sbjct: 618 KVVIYPGNVVVLRMSKPTSFDYKSGQYVFVQCPSVSKFEW 657
>AT5G60010.1 | chr5:24160456-24164755 FORWARD LENGTH=887
Length = 886
Score = 59.7 bits (143), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 33/41 (80%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++ +Y GNV+A+++TKP GFKYKSG Y++V C ++S FEW
Sbjct: 560 IKAIVYSGNVLALYVTKPPGFKYKSGMYMFVKCPDLSKFEW 600
>AT1G19230.2 | chr1:6644189-6649149 FORWARD LENGTH=935
Length = 934
Score = 58.5 bits (140), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 33/41 (80%)
Query: 2 VQVAIYPGNVIAIHMTKPHGFKYKSGQYIYVNCGEVSPFEW 42
++V++ PG V+++ M+KP GFKYKSGQYI++ C +S FEW
Sbjct: 616 LKVSMLPGEVLSLIMSKPPGFKYKSGQYIFLQCPTISRFEW 656
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.140 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,013,739
Number of extensions: 25033
Number of successful extensions: 48
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 10
Length of query: 42
Length of database: 11,106,569
Length adjustment: 16
Effective length of query: 26
Effective length of database: 10,667,913
Effective search space: 277365738
Effective search space used: 277365738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)