Os01g0734200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RbohAOsp (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0734200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to RbohAOsp (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.56 | 0.4 | 10.1 | -1.1 | 0.817 | 1.28 | -0.931 | -3.84 | 0.322 | 11.8 | 28.73 | 1234 | -- | -- |
| 74.82 | 0.403 | 10 | -0.404 | 0.815 | 0.913 | -0.912 | -- | 0.271 | 11.7 | 26.55 | 2599 | -- | -- |
| 76.02 | 0.406 | 10.1 | -0.934 | 0.867 | 1.2 | -- | -2.49 | 0.253 | 11.6 | 27.82 | 1188 | -- | -- |
| 78.35 | 0.412 | 10 | -0.443 | 0.838 | 0.955 | -- | -- | 0.256 | 11.5 | 26.57 | 2501 | -- | -- |
| 114.4 | 0.498 | 10.1 | -0.814 | -- | 1.03 | -- | -1.61 | 0.183 | -- | 26.81 | 1535 | -- | -- |
| 107.17 | 0.485 | 10 | -0.11 | 0.685 | -- | -1.06 | -- | 0.292 | 11.6 | -- | -- | -- | -- |
| 111.9 | 0.495 | 10 | -0.154 | 0.693 | -- | -- | -- | 0.287 | 11.3 | -- | -- | -- | -- |
| 110.37 | 0.489 | 10.1 | -0.469 | -- | 0.856 | -- | -- | 0.0565 | -- | 26.8 | 7418 | -- | -- |
| 83.22 | 0.425 | 10 | -- | 0.823 | 0.861 | -- | -- | 0.316 | 11.5 | 26.7 | 2510 | -- | -- |
| 141.95 | 0.557 | 10.1 | -0.172 | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
| 112.53 | 0.496 | 10 | -- | 0.694 | -- | -- | -- | 0.304 | 11.4 | -- | -- | -- | -- |
| 115.38 | 0.5 | 10.1 | -- | -- | 0.776 | -- | -- | 0.181 | -- | 28.38 | 7438 | -- | -- |
| 142.73 | 0.558 | 10.1 | -- | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.24 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 2 | 71.33 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 3 | 71.83 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 18 | 71.97 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 19 | 72.27 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 20 | 72.33 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 22 | 72.72 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 27 | 72.82 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 34 | 73.16 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 35 | 73.37 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 36 | 73.37 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 43 | 73.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 49 | 73.69 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 51 | 73.70 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 52 | 73.72 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 67 | 73.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 71 | 73.80 | radiation | 10 | 1440 | > th | dose independent | sin | 12 | NA |
| 72 | 73.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 79 | 73.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 94 | 74.00 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 97 | 74.02 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 99 | 74.06 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 100 | 74.06 | humidity | 70 | 1440 | < th | dose independent | sin | 10 | NA |
| 114 | 74.13 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 122 | 74.21 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 123 | 74.22 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 144 | 74.28 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 155 | 74.39 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 174 | 74.57 | humidity | 70 | 1440 | > th | dose independent | sin | 10 | NA |
| 177 | 74.58 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 192 | 74.70 | temperature | 25 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 195 | 74.71 | temperature | 25 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 203 | 74.73 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 205 | 74.74 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 207 | 74.74 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 211 | 74.76 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 228 | 74.77 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 243 | 74.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 245 | 74.84 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 247 | 74.84 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 250 | 74.85 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 260 | 74.88 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 267 | 74.90 | radiation | 30 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 293 | 74.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 300 | 74.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 305 | 74.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 307 | 74.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 308 | 74.99 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 315 | 75.01 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 316 | 75.01 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 425 | 75.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 450 | 75.05 | temperature | 30 | 1440 | > th | dose dependent | sin | 17 | NA |
| 484 | 75.08 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 499 | 75.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 524 | 75.13 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 528 | 75.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 580 | 75.18 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 595 | 75.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 596 | 75.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 598 | 75.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 599 | 75.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 604 | 75.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 609 | 75.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 633 | 75.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 641 | 75.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 643 | 75.22 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 646 | 75.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 668 | 75.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 669 | 75.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 672 | 75.23 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 818 | 75.26 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 848 | 75.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 869 | 75.31 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 888 | 75.32 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 893 | 75.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 898 | 75.34 | radiation | 20 | 1440 | < th | dose dependent | sin | 12 | NA |
| 903 | 75.35 | radiation | 40 | 1440 | > th | dose independent | sin | 12 | NA |
| 907 | 75.35 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 910 | 75.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 912 | 75.36 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 916 | 75.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 943 | 75.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 944 | 75.39 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 956 | 75.39 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 958 | 75.40 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 974 | 75.40 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 977 | 75.41 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 980 | 75.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 986 | 75.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 999 | 75.46 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |