Os08g0453700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RbohAOsp (Fragment).
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Os08g0453700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RbohAOsp (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.39 | 0.733 | 9.83 | 3.44 | 1.71 | 0.4 | -3.93 | 3.15 | 1.45 | 22.9 | 1.064 | 4326 | -- | -- |
| 253.41 | 0.741 | 9.91 | 2.91 | 1.76 | 0.353 | -4.16 | -- | 1.37 | 22.9 | 31.74 | 30245 | -- | -- |
| 259.09 | 0.755 | 9.88 | 2.9 | 1.68 | -0.0377 | -- | 3.1 | 1.36 | 23.4 | 2.33 | 4526 | -- | -- |
| 314.82 | 0.826 | 9.92 | 2.75 | 1.76 | 0.368 | -- | -- | 1.21 | 23.1 | 10.01 | 30526 | -- | -- |
| 300.4 | 0.812 | 9.83 | 2.92 | -- | -1.14 | -- | 3.28 | 1.44 | -- | 2.324 | 4536 | -- | -- |
| 256.84 | 0.751 | 9.89 | 2.74 | 1.72 | -- | -3.95 | -- | 1.34 | 23 | -- | -- | -- | -- |
| 321.05 | 0.839 | 9.88 | 2.89 | 1.74 | -- | -- | -- | 1.35 | 23.4 | -- | -- | -- | -- |
| 364.65 | 0.893 | 9.83 | 2.94 | -- | -1.14 | -- | -- | 1.41 | -- | 1.36 | 4624 | -- | -- |
| 379.53 | 0.907 | 9.87 | -- | 1.53 | 1.91 | -- | -- | 0.795 | 23.4 | 0.0002612 | 47520 | -- | -- |
| 509.96 | 1.06 | 9.84 | 2.94 | -- | -- | -- | -- | 1.37 | -- | -- | -- | -- | -- |
| 541.64 | 1.09 | 9.95 | -- | 1.77 | -- | -- | -- | 1.03 | 23.5 | -- | -- | -- | -- |
| 543.47 | 1.09 | 10 | -- | -- | 2.17 | -- | -- | 0.446 | -- | 0.002606 | 47520 | -- | -- |
| 737.61 | 1.27 | 9.91 | -- | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.14 | wind | 7 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 3 | 228.10 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 4 | 228.24 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 6 | 228.63 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 7 | 228.66 | wind | 5 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 8 | 228.81 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 9 | 228.87 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 52 | 230.18 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 133 | 230.88 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 243 | 231.26 | atmosphere | 1000 | 14400 | > th | dose dependent | sin | 20 | NA |
| 307 | 231.41 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 21 | NA |
| 310 | 231.41 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 334 | 231.46 | wind | 9 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 552 | 231.84 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 21 | NA |
| 563 | 231.85 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 19 | NA |
| 597 | 231.88 | humidity | 70 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 681 | 231.95 | atmosphere | 1000 | 14400 | > th | dose dependent | no | NA | NA |
| 727 | 231.99 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 966 | 232.28 | wind | 5 | 720 | < th | dose dependent | rect. | 3 | 16 |