BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0433700 Os12g0433700|J065129G13
         (87 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0433700  Lg106-like family protein                           181   1e-46
Os03g0304800  Lg106-like family protein                           134   1e-32
Os01g0305200  Lg106-like family protein                           107   2e-24
Os01g0249300  Lg106-like family protein                            72   7e-14
Os01g0664500  Lg106-like family protein                            71   2e-13
Os05g0566600  Lg106-like family protein                            67   4e-12

>Os12g0433700 Lg106-like family protein
          Length = 87

 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MADCNDKSSASSMEKQTYAQNKYGGITPKKPLISKDPERAYFDSADWVLGKQAANGSARA 60
          MADCNDKSSASSMEKQTYAQNKYGGITPKKPLISKDPERAYFDSADWVLGKQAANGSARA
Sbjct: 1  MADCNDKSSASSMEKQTYAQNKYGGITPKKPLISKDPERAYFDSADWVLGKQAANGSARA 60

Query: 61 AIESLKPKLKRTPHHQLPPRNPTCASS 87
          AIESLKPKLKRTPHHQLPPRNPTCASS
Sbjct: 61 AIESLKPKLKRTPHHQLPPRNPTCASS 87



>Os03g0304800 Lg106-like family protein
          Length = 88

 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 75/88 (85%), Gaps = 1/88 (1%)

Query: 1  MADCNDKSSASSMEKQTYAQNKYGGITPKKPLISKDPERAYFDSADWVLGKQAANGS-AR 59
          MA C++  S +SME++   + KYGGI PKKPLISKD ERAYFDSADWVLGKQAAN + ++
Sbjct: 1  MAGCDEAKSLASMEEEACIEKKYGGIAPKKPLISKDHERAYFDSADWVLGKQAANSNGSK 60

Query: 60 AAIESLKPKLKRTPHHQLPPRNPTCASS 87
          AA+E+LKPKLKRTPHHQLPPR PTCASS
Sbjct: 61 AAVETLKPKLKRTPHHQLPPRKPTCASS 88



>Os01g0305200 Lg106-like family protein
          Length = 90

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 63/86 (73%)

Query: 1  MADCNDKSSASSMEKQTYAQNKYGGITPKKPLISKDPERAYFDSADWVLGKQAANGSARA 60
          MA   + + A++  ++  +QNKYGGI+PKKPLI+KD ERAYFDSADW LGKQ A+ S + 
Sbjct: 1  MASFGEDNRAATQREEGSSQNKYGGISPKKPLINKDHERAYFDSADWALGKQGASNSTKG 60

Query: 61 AIESLKPKLKRTPHHQLPPRNPTCAS 86
            E LKPKL+RT + QLPPR P C S
Sbjct: 61 TTEPLKPKLQRTAYPQLPPRRPACTS 86



>Os01g0249300 Lg106-like family protein
          Length = 126

 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 1  MADCNDKSSASSMEKQTYAQNKYGGITPKKP-LISKDPERAYFDSADWVLGKQAANGSA- 58
          M    D S  S+ E++   + K+GG+ PKKP LISKD ERAYFDSADW LGK    G+A 
Sbjct: 21 MDQTEDNSMPSAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAK 80

Query: 59 -RAAIESLKPKLKRT 72
           +  +E+L+PKL+ T
Sbjct: 81 PKGPLEALRPKLQPT 95



>Os01g0664500 Lg106-like family protein
          Length = 142

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 5/88 (5%)

Query: 4   CNDKSSASSM----EKQTYAQNKYGGITPKK-PLISKDPERAYFDSADWVLGKQAANGSA 58
             ++S AS M    E++   + KYGGI PK+ P I+KD +RAYFDSADW LGKQ  +   
Sbjct: 27  TQEQSEASGMPSPQEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQGGSHKP 86

Query: 59  RAAIESLKPKLKRTPHHQLPPRNPTCAS 86
           +  +E+L+PKL+ T  H    R P  ++
Sbjct: 87  KGPLEALRPKLQPTQQHARARRTPYASA 114



>Os05g0566600 Lg106-like family protein
          Length = 106

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 11 SSMEKQTYAQNKYGGITPKKP-LISKDPERAYFDSADWVLGKQAAN-GSARAAIESLKPK 68
          S  E++   + KYGGI P+KP LI+KD ERAYFDSADW LGKQ  +    +  +E+L+PK
Sbjct: 3  SPQEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALGKQGGHPQKPKGPLEALRPK 62

Query: 69 LKRT 72
          L+ T
Sbjct: 63 LQPT 66



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.124    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,279,679
Number of extensions: 112487
Number of successful extensions: 306
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 6
Length of query: 87
Length of database: 17,035,801
Length adjustment: 57
Effective length of query: 30
Effective length of database: 14,059,603
Effective search space: 421788090
Effective search space used: 421788090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 149 (62.0 bits)