Os01g0249300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lg106-like family protein.
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Os01g0249300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lg106-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.58 | 0.179 | 13.6 | -0.291 | 0.216 | 0.297 | 0.156 | 1.62 | 0.0161 | 1.09 | 25.01 | 821 | -- | -- |
| 17.19 | 0.193 | 13.5 | 0.00435 | 0.113 | 0.333 | -0.272 | -- | 0.0882 | 22.6 | 48.11 | 156 | -- | -- |
| 14.67 | 0.178 | 13.6 | -0.299 | 0.211 | 0.291 | -- | 1.61 | 0.0175 | 0.862 | 25.1 | 786 | -- | -- |
| 17.51 | 0.195 | 13.5 | 0.00348 | 0.131 | 0.276 | -- | -- | 0.0798 | 23.9 | 118 | 157 | -- | -- |
| 16.86 | 0.191 | 13.6 | -0.243 | -- | 0.273 | -- | 1.52 | 0.0281 | -- | 31.1 | 285 | -- | -- |
| 18.21 | 0.2 | 13.6 | -0.0587 | 0.184 | -- | -0.142 | -- | 0.0413 | 0.951 | -- | -- | -- | -- |
| 18.28 | 0.2 | 13.6 | -0.0539 | 0.186 | -- | -- | -- | 0.0416 | 1.34 | -- | -- | -- | -- |
| 18.1 | 0.198 | 13.5 | 0.0264 | -- | 0.401 | -- | -- | 0.099 | -- | 53.99 | 4 | -- | -- |
| 17.51 | 0.195 | 13.5 | -- | 0.131 | 0.274 | -- | -- | 0.0792 | 24 | 136.2 | 157 | -- | -- |
| 20.41 | 0.211 | 13.5 | -0.0466 | -- | -- | -- | -- | 0.0455 | -- | -- | -- | -- | -- |
| 18.35 | 0.2 | 13.5 | -- | 0.185 | -- | -- | -- | 0.0477 | 1.32 | -- | -- | -- | -- |
| 18.11 | 0.198 | 13.5 | -- | -- | 0.392 | -- | -- | 0.0951 | -- | 62.79 | 4 | -- | -- |
| 20.47 | 0.211 | 13.5 | -- | -- | -- | -- | -- | 0.0507 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.31 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 11 | 14.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 27 | 14.46 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 35 | 14.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 80 | 14.59 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 20 |
| 105 | 14.64 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 15 |
| 113 | 14.65 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 119 | 14.66 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 16 |
| 123 | 14.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 124 | 14.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 128 | 14.67 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 140 | 14.69 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 141 | 14.69 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 14 |
| 149 | 14.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 151 | 14.70 | temperature | 25 | 720 | > th | dose independent | sin | 4 | NA |
| 158 | 14.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 178 | 14.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 209 | 14.75 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 12 |
| 234 | 14.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 257 | 14.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 290 | 14.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 353 | 14.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 354 | 14.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 375 | 14.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 445 | 14.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 489 | 14.90 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 537 | 14.92 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 590 | 14.95 | temperature | 10 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 634 | 14.97 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 656 | 14.97 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 829 | 15.04 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |