BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0249300 Os01g0249300|AK061748
         (126 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64130.3  | chr5:25664547-25665339 REVERSE LENGTH=141          111   8e-26
AT1G69510.1  | chr1:26126779-26127725 FORWARD LENGTH=138          104   1e-23
AT4G16146.1  | chr4:9142663-9144356 REVERSE LENGTH=103             68   1e-12

>AT5G64130.3 | chr5:25664547-25665339 REVERSE LENGTH=141
          Length = 140

 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 70/121 (57%), Gaps = 28/121 (23%)

Query: 26  DNSMPSAQEQELAIKKKFGGLMPKKPPLISK-------------------------DHER 60
           + SMPS+Q++E  +KKK+GGLMPKKPPLISK                         DHER
Sbjct: 18  EKSMPSSQQEEAVVKKKYGGLMPKKPPLISKVSEVTGLIRDFGVSFLVFLRCVYNQDHER 77

Query: 61  AYFDSADWALGKSGQQGAAKPKGPLEALRPKLQPTXXXXXXXXXLINTSSENEDGDGAGA 120
           AYFDSADWALGK   QG AKPKGPLEALRPKLQPT             S   EDG  A A
Sbjct: 78  AYFDSADWALGK---QGVAKPKGPLEALRPKLQPTQQQTRYRKSPCAPSEGGEDGGAAQA 134

Query: 121 E 121
           E
Sbjct: 135 E 135



>AT1G69510.1 | chr1:26126779-26127725 FORWARD LENGTH=138
          Length = 137

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 65/95 (68%), Gaps = 6/95 (6%)

Query: 20  PMDQTEDNSMPSAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAA 79
           P+D    + M S   +E AIKKK+GGL+PKK PLISKDHERA+FDSADWALGK   Q   
Sbjct: 14  PIDNKVSDEMES---EENAIKKKYGGLLPKKIPLISKDHERAFFDSADWALGK---QKGQ 67

Query: 80  KPKGPLEALRPKLQPTXXXXXXXXXLINTSSENED 114
           KPKGPLEALRPKLQPT         +  +S E ED
Sbjct: 68  KPKGPLEALRPKLQPTPQQQPRARRMAYSSGETED 102



>AT4G16146.1 | chr4:9142663-9144356 REVERSE LENGTH=103
          Length = 102

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 44/67 (65%)

Query: 29 MPSAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAKPKGPLEAL 88
          + S Q++  +   K+GGL+PKK PLISKD +RA+FDSADWAL K       +    +E L
Sbjct: 12 LFSQQQESTSGANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQRTIAAIEKL 71

Query: 89 RPKLQPT 95
          RPKLQ T
Sbjct: 72 RPKLQRT 78



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.305    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,895,700
Number of extensions: 113216
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 3
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 105 (45.1 bits)