BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0249300 Os01g0249300|AK061748
         (126 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0249300  Lg106-like family protein                           233   2e-62
Os05g0566600  Lg106-like family protein                           114   2e-26
Os01g0664500  Lg106-like family protein                           112   8e-26
Os01g0305200  Lg106-like family protein                            74   3e-14
Os03g0304800  Lg106-like family protein                            74   4e-14
Os12g0433700  Lg106-like family protein                            72   8e-14

>Os01g0249300 Lg106-like family protein
          Length = 126

 Score =  233 bits (594), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/126 (92%), Positives = 117/126 (92%)

Query: 1   MSDMKDTNAAGPETVGNPDPMDQTEDNSMPSAQEQELAIKKKFGGLMPKKPPLISKDHER 60
           MSDMKDTNAAGPETVGNPDPMDQTEDNSMPSAQEQELAIKKKFGGLMPKKPPLISKDHER
Sbjct: 1   MSDMKDTNAAGPETVGNPDPMDQTEDNSMPSAQEQELAIKKKFGGLMPKKPPLISKDHER 60

Query: 61  AYFDSADWALGKSGQQGAAKPKGPLEALRPKLQPTXXXXXXXXXLINTSSENEDGDGAGA 120
           AYFDSADWALGKSGQQGAAKPKGPLEALRPKLQPT         LINTSSENEDGDGAGA
Sbjct: 61  AYFDSADWALGKSGQQGAAKPKGPLEALRPKLQPTRQQQQRSRRLINTSSENEDGDGAGA 120

Query: 121 EDMNIN 126
           EDMNIN
Sbjct: 121 EDMNIN 126



>Os05g0566600 Lg106-like family protein
          Length = 106

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 71/98 (72%), Gaps = 2/98 (2%)

Query: 29  MPSAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAKPKGPLEAL 88
           MPS QE+E AIKKK+GG++P+KP LI+KDHERAYFDSADWALGK G     KPKGPLEAL
Sbjct: 1   MPSPQEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALGKQGGH-PQKPKGPLEAL 59

Query: 89  RPKLQPTXXXXXXXXXLINTSSENEDGDGAGAEDMNIN 126
           RPKLQPT          ++ S +NE+G  +  ED + N
Sbjct: 60  RPKLQPT-QQQARSRRFLHASVDNEEGLNSPTEDASQN 96



>Os01g0664500 Lg106-like family protein
          Length = 142

 Score =  112 bits (279), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 64/74 (86%), Gaps = 2/74 (2%)

Query: 22  DQTEDNSMPSAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAKP 81
           +Q+E + MPS QE+E AIKKK+GG++PK+ P I+KDH+RAYFDSADWALGK G  G+ KP
Sbjct: 29  EQSEASGMPSPQEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQG--GSHKP 86

Query: 82  KGPLEALRPKLQPT 95
           KGPLEALRPKLQPT
Sbjct: 87  KGPLEALRPKLQPT 100



>Os01g0305200 Lg106-like family protein
          Length = 90

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 50/71 (70%), Gaps = 4/71 (5%)

Query: 25 EDNSMPSAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAKPKGP 84
          EDN   + Q +E + + K+GG+ PKKP LI+KDHERAYFDSADWALGK G   +   KG 
Sbjct: 6  EDNRA-ATQREEGSSQNKYGGISPKKP-LINKDHERAYFDSADWALGKQGASNST--KGT 61

Query: 85 LEALRPKLQPT 95
           E L+PKLQ T
Sbjct: 62 TEPLKPKLQRT 72



>Os03g0304800 Lg106-like family protein
          Length = 88

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 31 SAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAKPKGPLEALRP 90
          ++ E+E  I+KK+GG+ PKKP LISKDHERAYFDSADW LGK         K  +E L+P
Sbjct: 11 ASMEEEACIEKKYGGIAPKKP-LISKDHERAYFDSADWVLGKQAANSNGS-KAAVETLKP 68

Query: 91 KLQPT 95
          KL+ T
Sbjct: 69 KLKRT 73



>Os12g0433700 Lg106-like family protein
          Length = 87

 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 21 MDQTEDNSMPSAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAK 80
          M    D S  S+ E++   + K+GG+ PKKP LISKD ERAYFDSADW LGK    G+A 
Sbjct: 1  MADCNDKSSASSMEKQTYAQNKYGGITPKKP-LISKDPERAYFDSADWVLGKQAANGSA- 58

Query: 81 PKGPLEALRPKLQPT 95
           +  +E+L+PKL+ T
Sbjct: 59 -RAAIESLKPKLKRT 72



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.305    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,736,252
Number of extensions: 188389
Number of successful extensions: 288
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 6
Length of query: 126
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 37
Effective length of database: 12,388,755
Effective search space: 458383935
Effective search space used: 458383935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 149 (62.0 bits)