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Os03g0304800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lg106-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.7 (0.0376) R2 : 0.695
β1 : -3.32 (0.142) R2dD : 0.404 R2D : 0.422
β2 : 1.01 (0.114) R2dC : 0.0785 R2C : -0.0302
β3 : 2.35 (0.218) R2dE : 0.117 R2E : 0.0318
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.06 (0.724) R2dD*E : 0.0696 R2D*E : 0.153
γ1 : -0.744 (0.0805) R2dN8 : 0.0771 R2N8 : 0.00829
σ : 0.703
deviance : 227.55
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C
peak time of C : 15.3
E
wheather : humidity
threshold : 89.61
memory length : 693
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 14.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.04 0.708 9.7 -3.32 1.02 2.4 -0.464 6.76 -0.744 15.4 89.69 694 17.9 14.3
263.45 0.756 9.7 -3.43 1.16 2.99 -2.07 -- -0.729 15.5 89.88 684 18.3 13.9
227.55 0.703 9.7 -3.32 1.01 2.35 -- 7.06 -0.744 15.3 89.61 693 17.9 14.2
274.95 0.772 9.7 -3.64 1.08 2.82 -- -- -0.741 15.3 88.78 689 18.2 14.1
262.82 0.755 9.72 -3.37 -- 1.89 -- 7.1 -0.831 -- 88.26 684 18.2 14.9
345.08 0.871 9.7 -3.71 0.355 -- -1.81 -- -0.821 15.8 -- -- -- --
354.48 0.882 9.71 -3.74 0.345 -- -- -- -0.831 15.1 -- -- -- --
297.57 0.803 9.72 -3.76 -- 2.03 -- -- -0.872 -- 90.75 672 18.4 16.4
355.67 0.878 9.7 -- 0.793 4 -- -- -1 15.8 89.38 28034 17.8 14
361.26 0.888 9.71 -3.75 -- -- -- -- -0.84 -- -- -- -- --
722.36 1.26 9.61 -- 0.419 -- -- -- -0.415 15.1 -- -- -- --
324.22 0.839 9.68 -- -- 4.03 -- -- -0.801 -- 88.29 28914 15.1 16.4
732.35 1.26 9.61 -- -- -- -- -- -0.424 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 224.74 humidity 70.0 43200 > th dose dependent rect. 5 9
10 226.59 humidity 70.0 43200 > th dose dependent rect. 4 17
20 227.20 radiation 40.0 14400 > th dose dependent rect. 14 1
23 227.34 radiation 40.0 14400 > th dose dependent rect. 14 19
24 227.43 humidity 70.0 43200 > th dose dependent sin 1 NA
54 227.93 humidity 80.0 43200 > th dose independent rect. 4 18
63 228.21 humidity 70.0 43200 > th dose dependent rect. 9 2
70 228.56 humidity 80.0 43200 < th dose independent rect. 5 17
72 228.62 humidity 80.0 43200 < th dose independent rect. 3 18
78 228.80 humidity 80.0 43200 > th dose independent rect. 2 19
103 229.41 humidity 90.0 43200 < th dose independent rect. 10 6
113 229.56 humidity 90.0 720 < th dose dependent rect. 18 14
117 229.71 humidity 80.0 43200 < th dose independent rect. 9 2
150 230.36 humidity 80.0 43200 > th dose independent rect. 8 3
151 230.48 humidity 80.0 43200 > th dose independent sin 1 NA
188 231.17 humidity 80.0 43200 > th dose independent rect. 4 13
193 231.22 humidity 80.0 43200 > th dose independent rect. 6 8
200 231.34 humidity 80.0 43200 > th dose independent rect. 5 11
213 231.52 humidity 80.0 43200 < th dose independent sin 1 NA
223 231.81 humidity 60.0 43200 > th dose dependent rect. 15 1
233 231.94 humidity 60.0 43200 > th dose dependent rect. 13 4
237 231.99 humidity 90.0 43200 < th dose independent rect. 15 1
267 232.38 humidity 80.0 43200 < th dose independent sin 19 NA
282 232.54 humidity 80.0 43200 > th dose independent sin 19 NA
294 232.77 humidity 70.0 43200 > th dose dependent rect. 13 9
317 233.03 humidity 80.0 43200 < th dose independent rect. 4 13
326 233.15 humidity 80.0 43200 < th dose independent rect. 13 9
342 233.29 humidity 80.0 43200 < th dose independent rect. 5 11
371 233.54 humidity 80.0 43200 > th dose independent rect. 13 9
381 233.61 radiation 20.0 14400 > th dose dependent rect. 16 16
401 233.79 radiation 1.0 43200 > th dose independent rect. 4 3
415 233.86 radiation 1.0 43200 < th dose independent rect. 19 12
423 233.90 radiation 1.0 43200 < th dose independent rect. 22 9
426 233.92 radiation 1.0 43200 < th dose independent rect. 24 7
429 233.95 radiation 1.0 43200 < th dose independent rect. 4 3
443 234.11 precipitation 0.1 43200 > th dose dependent rect. 13 3
459 234.25 precipitation 0.1 43200 < th dose independent rect. 11 6
461 234.25 precipitation 0.1 43200 < th dose dependent rect. 11 6
487 234.40 precipitation 0.1 43200 > th dose independent rect. 11 6
490 234.42 radiation 10.0 14400 > th dose dependent rect. 7 1
528 234.64 humidity 70.0 43200 > th dose dependent rect. 18 2
537 234.70 radiation 40.0 14400 > th dose dependent rect. 7 3
554 234.71 radiation 20.0 14400 < th dose independent rect. 16 18
563 234.76 precipitation 0.1 43200 > th dose dependent rect. 11 6
638 235.31 precipitation 0.1 43200 < th dose independent rect. 13 3
639 235.31 precipitation 0.1 43200 < th dose dependent rect. 13 3
686 235.67 precipitation 0.1 43200 > th dose independent rect. 13 3
696 235.71 humidity 90.0 720 < th dose dependent rect. 19 6
724 235.88 radiation 20.0 14400 < th dose independent rect. 19 15
728 235.89 radiation 20.0 14400 < th dose independent rect. 6 4
729 235.89 radiation 20.0 14400 < th dose independent rect. 22 12
741 235.91 radiation 20.0 14400 < th dose independent rect. 24 10
746 235.93 radiation 10.0 14400 < th dose independent rect. 5 7
747 235.93 radiation 20.0 14400 < th dose independent rect. 2 8
773 236.07 radiation 20.0 14400 < th dose independent sin 10 NA
829 236.26 humidity 90.0 720 < th dose dependent rect. 18 10
861 236.44 humidity 70.0 43200 > th dose dependent no NA NA
867 236.46 humidity 80.0 43200 > th dose dependent rect. 13 4
923 236.79 humidity 90.0 43200 < th dose dependent rect. 15 1