BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0304800 Os03g0304800|AK062656
         (88 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0304800  Lg106-like family protein                           181   7e-47
Os12g0433700  Lg106-like family protein                           134   1e-32
Os01g0305200  Lg106-like family protein                           112   7e-26
Os05g0566600  Lg106-like family protein                            84   3e-17
Os01g0664500  Lg106-like family protein                            80   4e-16
Os01g0249300  Lg106-like family protein                            74   3e-14

>Os03g0304800 Lg106-like family protein
          Length = 88

 Score =  181 bits (460), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MAGCDEAKSLASMEEEACIEKKYGGIAPKKPLISKDHERAYFDSADWVLGKQAANSNGSK 60
          MAGCDEAKSLASMEEEACIEKKYGGIAPKKPLISKDHERAYFDSADWVLGKQAANSNGSK
Sbjct: 1  MAGCDEAKSLASMEEEACIEKKYGGIAPKKPLISKDHERAYFDSADWVLGKQAANSNGSK 60

Query: 61 AAVETLKPKLKRTPHHQLPPRKPTCASS 88
          AAVETLKPKLKRTPHHQLPPRKPTCASS
Sbjct: 61 AAVETLKPKLKRTPHHQLPPRKPTCASS 88



>Os12g0433700 Lg106-like family protein
          Length = 87

 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 75/88 (85%), Gaps = 1/88 (1%)

Query: 1  MAGCDEAKSLASMEEEACIEKKYGGIAPKKPLISKDHERAYFDSADWVLGKQAANSNGSK 60
          MA C++  S +SME++   + KYGGI PKKPLISKD ERAYFDSADWVLGKQAAN + ++
Sbjct: 1  MADCNDKSSASSMEKQTYAQNKYGGITPKKPLISKDPERAYFDSADWVLGKQAANGS-AR 59

Query: 61 AAVETLKPKLKRTPHHQLPPRKPTCASS 88
          AA+E+LKPKLKRTPHHQLPPR PTCASS
Sbjct: 60 AAIESLKPKLKRTPHHQLPPRNPTCASS 87



>Os01g0305200 Lg106-like family protein
          Length = 90

 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 1  MAGCDEAKSLASMEEEACIEKKYGGIAPKKPLISKDHERAYFDSADWVLGKQAANSNGSK 60
          MA   E    A+  EE   + KYGGI+PKKPLI+KDHERAYFDSADW LGKQ A SN +K
Sbjct: 1  MASFGEDNRAATQREEGSSQNKYGGISPKKPLINKDHERAYFDSADWALGKQGA-SNSTK 59

Query: 61 AAVETLKPKLKRTPHHQLPPRKPTCAS 87
             E LKPKL+RT + QLPPR+P C S
Sbjct: 60 GTTEPLKPKLQRTAYPQLPPRRPACTS 86



>Os05g0566600 Lg106-like family protein
          Length = 106

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 47/62 (75%), Gaps = 1/62 (1%)

Query: 13 MEEEACIEKKYGGIAPKKP-LISKDHERAYFDSADWVLGKQAANSNGSKAAVETLKPKLK 71
           EEEA I+KKYGGI P+KP LI+KDHERAYFDSADW LGKQ  +    K  +E L+PKL+
Sbjct: 5  QEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALGKQGGHPQKPKGPLEALRPKLQ 64

Query: 72 RT 73
           T
Sbjct: 65 PT 66



>Os01g0664500 Lg106-like family protein
          Length = 142

 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 3/84 (3%)

Query: 6   EAKSLAS-MEEEACIEKKYGGIAPKK-PLISKDHERAYFDSADWVLGKQAANSNGSKAAV 63
           EA  + S  EEEA I+KKYGGI PK+ P I+KDH+RAYFDSADW LGKQ   S+  K  +
Sbjct: 32  EASGMPSPQEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQGG-SHKPKGPL 90

Query: 64  ETLKPKLKRTPHHQLPPRKPTCAS 87
           E L+PKL+ T  H    R P  ++
Sbjct: 91  EALRPKLQPTQQHARARRTPYASA 114



>Os01g0249300 Lg106-like family protein
          Length = 126

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 11 ASMEEEACIEKKYGGIAPKKP-LISKDHERAYFDSADWVLGKQAANSNGS-KAAVETLKP 68
          ++ E+E  I+KK+GG+ PKKP LISKDHERAYFDSADW LGK         K  +E L+P
Sbjct: 31 SAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAKPKGPLEALRP 90

Query: 69 KLKRT 73
          KL+ T
Sbjct: 91 KLQPT 95



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.126    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,424,773
Number of extensions: 119852
Number of successful extensions: 291
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 6
Length of query: 88
Length of database: 17,035,801
Length adjustment: 58
Effective length of query: 30
Effective length of database: 14,007,389
Effective search space: 420221670
Effective search space used: 420221670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)