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Os12g0433700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lg106-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.1 (0.0446) R2 : 0.827
β1 : -4.36 (0.163) R2dD : 0.279 R2D : 0.231
β2 : 5.28 (0.14) R2dC : 0.848 R2C : -0.0096
β3 : 3.52 (0.113) R2dE : 0.577 R2E : -0.284
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.765 (0.095) R2dN8 : 0.0328 R2N8 : -0.0205
σ : 0.832
deviance : 319.15
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_____
C
peak time of C : 8.49
E
wheather : precipitation
threshold : 0.1557
memory length : 268
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.8
open length of G : 14

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
311.72 0.83 8.1 -4.38 5.25 3.51 1.92 0.524 -0.763 8.5 0.2366 270 14.8 14
312.44 0.823 8.11 -4.39 5.24 3.48 1.45 -- -0.769 8.46 0.2859 269 14.8 14
319.33 0.832 8.09 -4.27 5.16 3.18 -- -0.201 -0.709 8.2 0.5 256 14.7 14.1
319.15 0.832 8.1 -4.36 5.28 3.52 -- -- -0.765 8.49 0.1557 268 14.8 14
361.95 0.886 8.26 -4.53 -- 4.6 -- -1.35 -0.854 -- 0.5 858 14.1 16.4
392.81 0.929 8.16 -4.33 4.34 -- 1.55 -- -0.727 5.35 -- -- -- --
398.78 0.935 8.17 -4.33 4.35 -- -- -- -0.735 5.33 -- -- -- --
340.3 0.859 8.27 -4.25 -- 4.99 -- -- -0.763 -- 0.9572 904 14.1 15.5
814.74 1.33 7.99 -- 5.54 3.91 -- -- -0.266 8.79 0.1665 286 14.7 13.8
1387.4 1.74 8.22 -4.18 -- -- -- -- -0.627 -- -- -- -- --
891.84 1.4 8.06 -- 4.28 -- -- -- -0.253 5.37 -- -- -- --
812.81 1.33 8.19 -- -- 5.31 -- -- -0.398 -- 0.4719 895 14.1 15.7
1847.47 2.01 8.12 -- -- -- -- -- -0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 313.53 precipitation 0.1 270 < th dose independent rect. 15 14
2 313.53 precipitation 0.1 270 < th dose dependent rect. 15 14
3 317.78 temperature 20.0 270 > th dose independent rect. 21 3
5 318.92 temperature 20.0 270 > th dose independent rect. 19 6
6 319.33 temperature 15.0 10 > th dose independent rect. 7 20
7 319.43 temperature 15.0 270 > th dose independent rect. 5 20
13 321.04 wind 9.0 270 < th dose independent rect. 5 10
15 321.44 temperature 10.0 270 > th dose dependent rect. 20 4
18 321.88 radiation 40.0 270 < th dose independent rect. 15 14
19 321.95 wind 1.0 270 > th dose independent rect. 1 4
20 321.97 temperature 10.0 270 > th dose independent rect. 5 10
21 321.97 atmosphere 1015.0 270 < th dose independent rect. 5 10
22 321.97 temperature 10.0 270 > th dose independent rect. 15 14
23 322.16 temperature 30.0 270 < th dose dependent rect. 1 3
30 322.85 precipitation 0.1 270 < th dose independent rect. 5 10
31 322.85 precipitation 0.1 270 < th dose dependent rect. 5 10
32 322.90 wind 9.0 270 < th dose independent rect. 15 14
33 322.91 humidity 50.0 270 > th dose independent rect. 5 10
35 322.96 temperature 10.0 270 > th dose dependent rect. 19 6
36 323.12 radiation 1.0 270 < th dose dependent rect. 5 20
38 323.45 precipitation 0.1 270 < th dose independent rect. 23 22
39 323.45 precipitation 0.1 270 < th dose dependent rect. 23 22
41 323.75 humidity 50.0 270 > th dose independent rect. 5 20
44 324.27 radiation 20.0 10 < th dose dependent rect. 3 7
45 324.29 temperature 15.0 10 > th dose independent rect. 20 7
46 324.30 precipitation 0.1 270 < th dose independent rect. 1 18
47 324.30 precipitation 0.1 270 < th dose dependent rect. 1 18
50 324.68 atmosphere 995.0 270 > th dose independent rect. 5 10
52 324.75 precipitation 0.1 90 < th dose independent rect. 3 16
53 324.75 precipitation 0.1 90 < th dose dependent rect. 3 16
56 325.22 temperature 30.0 270 < th dose dependent rect. 24 5
62 325.59 wind 5.0 270 < th dose independent rect. 1 3
64 325.63 radiation 20.0 10 < th dose dependent rect. 3 19
70 325.83 radiation 10.0 10 < th dose independent rect. 3 19
71 325.86 temperature 30.0 90 < th dose dependent rect. 3 2
76 326.20 radiation 1.0 270 < th dose dependent rect. 17 8
80 326.32 temperature 10.0 10 > th dose dependent rect. 22 5
85 326.43 wind 5.0 10 < th dose independent rect. 3 4
91 326.60 precipitation 0.1 10 < th dose independent rect. 3 4
92 326.60 precipitation 0.1 10 < th dose dependent rect. 3 4
95 326.73 precipitation 0.1 270 < th dose independent rect. 1 4
96 326.73 precipitation 0.1 270 < th dose dependent rect. 1 4
118 327.08 temperature 30.0 30 < th dose dependent rect. 3 4
119 327.14 radiation 20.0 10 < th dose dependent rect. 3 17
123 327.21 radiation 1.0 270 < th dose independent rect. 5 20
125 327.22 radiation 10.0 10 < th dose independent rect. 3 8
140 327.61 radiation 20.0 10 < th dose dependent rect. 3 4
143 327.65 radiation 1.0 270 < th dose independent rect. 17 8
153 327.82 wind 1.0 270 > th dose independent rect. 1 18
176 328.24 wind 9.0 270 < th dose independent rect. 5 20
185 328.42 radiation 1.0 270 < th dose dependent rect. 1 4
187 328.44 radiation 1.0 270 < th dose dependent rect. 10 15
200 328.73 temperature 10.0 270 > th dose independent rect. 1 4
202 328.73 temperature 30.0 270 < th dose independent rect. 1 4
203 328.73 humidity 50.0 270 > th dose independent rect. 1 4
206 328.73 atmosphere 995.0 270 > th dose independent rect. 1 4
207 328.73 atmosphere 1010.0 270 < th dose independent rect. 1 4
209 328.73 radiation 20.0 270 < th dose independent rect. 1 4
217 328.75 radiation 1.0 270 < th dose independent rect. 1 4
228 328.99 wind 9.0 10 < th dose dependent rect. 3 4
295 329.96 atmosphere 995.0 270 > th dose independent rect. 15 14
305 330.16 humidity 70.0 270 > th dose independent rect. 19 6
310 330.21 temperature 10.0 10 > th dose independent rect. 3 4
312 330.21 temperature 30.0 10 < th dose independent rect. 3 4
313 330.21 humidity 50.0 10 > th dose independent rect. 3 4
316 330.21 atmosphere 995.0 10 > th dose independent rect. 3 4
317 330.21 atmosphere 1015.0 10 < th dose independent rect. 3 4
318 330.21 radiation 20.0 10 < th dose independent rect. 3 4
329 330.39 wind 9.0 10 < th dose independent rect. 7 20
331 330.44 radiation 40.0 270 < th dose dependent rect. 24 11
336 330.48 precipitation 0.1 10 < th dose independent rect. 7 20
338 330.48 precipitation 0.1 10 < th dose dependent rect. 7 20
346 330.58 atmosphere 995.0 10 > th dose independent rect. 3 17
358 330.74 wind 1.0 270 > th dose independent rect. 19 5
399 330.97 temperature 15.0 270 > th dose independent rect. 20 14
423 331.10 temperature 30.0 270 < th dose independent rect. 19 6
424 331.10 humidity 50.0 270 > th dose independent rect. 19 6
425 331.10 atmosphere 995.0 270 > th dose independent rect. 19 6
426 331.10 radiation 1.0 270 < th dose independent rect. 19 6
431 331.10 temperature 10.0 270 > th dose independent rect. 1 18
432 331.10 atmosphere 1015.0 270 < th dose independent rect. 1 18
448 331.27 wind 9.0 270 < th dose independent rect. 19 6
452 331.36 precipitation 0.1 10 < th dose independent rect. 20 7
454 331.36 precipitation 0.1 10 < th dose dependent rect. 20 7
456 331.39 humidity 50.0 90 > th dose dependent rect. 19 8
471 331.52 radiation 1.0 270 < th dose independent rect. 10 15
479 331.57 humidity 50.0 10 > th dose dependent rect. 20 7
490 331.74 wind 1.0 270 > th dose independent rect. 21 2
492 331.74 temperature 30.0 10 < th dose independent rect. 20 7
493 331.74 humidity 50.0 10 > th dose independent rect. 20 7
496 331.74 atmosphere 995.0 10 > th dose independent rect. 20 7
497 331.74 radiation 1.0 10 < th dose independent rect. 20 7
502 331.74 temperature 10.0 10 > th dose independent rect. 3 17
504 331.74 atmosphere 1015.0 10 < th dose independent rect. 3 17
505 331.74 radiation 1.0 10 < th dose dependent rect. 20 7
521 331.90 wind 9.0 10 < th dose independent rect. 20 7
611 332.59 wind 9.0 270 < th dose independent rect. 1 18
663 332.86 wind 9.0 270 < th dose dependent rect. 2 2
708 333.01 atmosphere 995.0 270 > th dose independent rect. 1 18
721 333.12 precipitation 0.1 270 < th dose independent rect. 19 6
722 333.12 precipitation 0.1 270 < th dose dependent rect. 19 6
727 333.19 wind 9.0 10 < th dose independent rect. 3 17
747 333.30 humidity 50.0 270 > th dose dependent rect. 19 6
775 333.39 wind 9.0 270 < th dose dependent rect. 1 4
875 333.81 wind 1.0 270 > th dose independent rect. 14 15
931 334.22 radiation 40.0 90 < th dose independent rect. 2 19
975 334.37 humidity 50.0 270 > th dose dependent rect. 17 8
983 334.43 radiation 10.0 270 < th dose independent rect. 24 10
988 334.45 precipitation 0.1 270 < th dose independent rect. 20 4
989 334.45 precipitation 0.1 270 < th dose dependent rect. 20 4