BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0433700 Os12g0433700|J065129G13
         (87 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16146.1  | chr4:9142663-9144356 REVERSE LENGTH=103             95   9e-21
AT1G69510.1  | chr1:26126779-26127725 FORWARD LENGTH=138           70   2e-13
AT5G64130.3  | chr5:25664547-25665339 REVERSE LENGTH=141           59   6e-10

>AT4G16146.1 | chr4:9142663-9144356 REVERSE LENGTH=103
          Length = 102

 Score = 94.7 bits (234), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 61/89 (68%), Gaps = 5/89 (5%)

Query: 3  DCN--DKSSASSMEKQTYAQNKYGGITPKK-PLISKDPERAYFDSADWVLGKQAANGSAR 59
          DCN  +    S  ++ T   NKYGG+ PKK PLISKD +RA+FDSADW L KQ A+   R
Sbjct: 4  DCNRVNDFLFSQQQESTSGANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQR 63

Query: 60 --AAIESLKPKLKRTPHHQLPPRNPTCAS 86
            AAIE L+PKL+RTP  QL PR PTCA+
Sbjct: 64 TIAAIEKLRPKLQRTPRKQLSPRRPTCAT 92



>AT1G69510.1 | chr1:26126779-26127725 FORWARD LENGTH=138
          Length = 137

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 6  DKSSASSMEKQTYA-QNKYGGITPKK-PLISKDPERAYFDSADWVLGKQAANGSARAAIE 63
          D   +  ME +  A + KYGG+ PKK PLISKD ERA+FDSADW LGKQ      +  +E
Sbjct: 16 DNKVSDEMESEENAIKKKYGGLLPKKIPLISKDHERAFFDSADWALGKQKGQ-KPKGPLE 74

Query: 64 SLKPKLKRTPHHQ 76
          +L+PKL+ TP  Q
Sbjct: 75 ALRPKLQPTPQQQ 87



>AT5G64130.3 | chr5:25664547-25665339 REVERSE LENGTH=141
          Length = 140

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 53/108 (49%), Gaps = 28/108 (25%)

Query: 6   DKSSASSMEKQTYAQNKYGGITPKKP-LISK-------------------------DPER 39
           +KS  SS +++   + KYGG+ PKKP LISK                         D ER
Sbjct: 18  EKSMPSSQQEEAVVKKKYGGLMPKKPPLISKVSEVTGLIRDFGVSFLVFLRCVYNQDHER 77

Query: 40  AYFDSADWVLGKQAANGSARAAIESLKPKLKRTPHHQLPPRNPTCASS 87
           AYFDSADW LGKQ      +  +E+L+PKL+ T   Q   R   CA S
Sbjct: 78  AYFDSADWALGKQGV-AKPKGPLEALRPKLQPT-QQQTRYRKSPCAPS 123



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.124    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,051,486
Number of extensions: 67591
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 3
Length of query: 87
Length of database: 11,106,569
Length adjustment: 58
Effective length of query: 29
Effective length of database: 9,516,441
Effective search space: 275976789
Effective search space used: 275976789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 104 (44.7 bits)