Os05g0566600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lg106-like family protein.
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Os05g0566600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lg106-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.7 | 0.273 | 9.47 | -1.11 | 0.721 | 0.78 | -0.688 | 1.16 | -0.189 | 6.6 | 9.692 | 4239 | -- | -- |
| 34.34 | 0.273 | 9.52 | -1.24 | 0.76 | 0.599 | -0.696 | -- | -0.241 | 6.59 | 21.27 | 3361 | -- | -- |
| 34.75 | 0.275 | 9.48 | -1.11 | 0.751 | 0.792 | -- | 1.12 | -0.193 | 6.77 | 8.152 | 3668 | -- | -- |
| 35.4 | 0.277 | 9.51 | -1.29 | 0.757 | 0.619 | -- | -- | -0.241 | 6.74 | 20.97 | 3467 | -- | -- |
| 61.75 | 0.366 | 9.49 | -1.13 | -- | 0.83 | -- | 1.14 | -0.183 | -- | 10.7 | 4246 | -- | -- |
| 44.65 | 0.313 | 9.49 | -1.04 | 0.742 | -- | -0.686 | -- | -0.117 | 6.41 | -- | -- | -- | -- |
| 45.82 | 0.317 | 9.48 | -1.05 | 0.739 | -- | -- | -- | -0.115 | 6.47 | -- | -- | -- | -- |
| 62.53 | 0.368 | 9.53 | -1.31 | -- | 0.635 | -- | -- | -0.251 | -- | 19.12 | 2843 | -- | -- |
| 71.74 | 0.397 | 9.46 | -- | 0.798 | 0.495 | -- | -- | 0.0117 | 6.12 | 28 | 3483 | -- | -- |
| 74.18 | 0.402 | 9.5 | -1.03 | -- | -- | -- | -- | -0.0996 | -- | -- | -- | -- | -- |
| 74.72 | 0.404 | 9.46 | -- | 0.725 | -- | -- | -- | 0.00156 | 6.55 | -- | -- | -- | -- |
| 92.6 | 0.448 | 9.44 | -- | -- | -0.495 | -- | -- | 0.163 | -- | 6.362 | 47520 | -- | -- |
| 102.09 | 0.472 | 9.47 | -- | -- | -- | -- | -- | 0.0145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.77 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 2 | 13 |
| 4 | 32.86 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 12 | 32.94 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 16 | 32.96 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 29 | 33.09 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 33 | 33.11 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 38 | 33.18 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 48 | 33.28 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 49 | 33.29 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 98 | 33.43 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 111 | 33.46 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 1 | 11 |
| 126 | 33.48 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 152 | 33.49 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 6 | NA |
| 205 | 33.53 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 271 | 33.58 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 315 | 33.62 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 327 | 33.63 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 361 | 33.65 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 7 | NA |
| 434 | 33.68 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 504 | 33.70 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 9 | 23 |
| 505 | 33.70 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 514 | 33.71 | temperature | 10.0 | 4320 | > th | dose dependent | no | NA | NA |
| 571 | 33.72 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 13 | 21 |
| 619 | 33.73 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 622 | 33.74 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 814 | 33.79 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 881 | 33.82 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 957 | 33.84 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 959 | 33.85 | temperature | 30.0 | 4320 | < th | dose dependent | no | NA | NA |
| 961 | 33.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 981 | 33.85 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 21 |