BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0566600 Os05g0566600|AK058475
         (106 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0566600  Lg106-like family protein                           186   4e-48
Os01g0664500  Lg106-like family protein                           121   1e-28
Os01g0249300  Lg106-like family protein                            96   4e-21
Os03g0304800  Lg106-like family protein                            75   1e-14
Os01g0305200  Lg106-like family protein                            65   9e-12

>Os05g0566600 Lg106-like family protein
          Length = 106

 Score =  186 bits (471), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/106 (87%), Positives = 93/106 (87%)

Query: 1   MPSPQEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALXXXXXXXXXXXXXLEALR 60
           MPSPQEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWAL             LEALR
Sbjct: 1   MPSPQEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALGKQGGHPQKPKGPLEALR 60

Query: 61  PKLQPTQQQARSRRFLHASVDNEEGLNSPTEDASQNQESNEVKDDK 106
           PKLQPTQQQARSRRFLHASVDNEEGLNSPTEDASQNQESNEVKDDK
Sbjct: 61  PKLQPTQQQARSRRFLHASVDNEEGLNSPTEDASQNQESNEVKDDK 106



>Os01g0664500 Lg106-like family protein
          Length = 142

 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 74/104 (71%), Gaps = 1/104 (0%)

Query: 1   MPSPQEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALXXXXXXXXXXXXXLEALR 60
           MPSPQEEEAAIKKKYGGI+P++   I KDH+RAYFDSADWAL             LEALR
Sbjct: 36  MPSPQEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWAL-GKQGGSHKPKGPLEALR 94

Query: 61  PKLQPTQQQARSRRFLHASVDNEEGLNSPTEDASQNQESNEVKD 104
           PKLQPTQQ AR+RR  +AS DN+E +N P ED  QN +  E K+
Sbjct: 95  PKLQPTQQHARARRTPYASADNDECMNLPPEDLIQNGDPIEDKN 138



>Os01g0249300 Lg106-like family protein
          Length = 126

 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 70/98 (71%), Gaps = 2/98 (2%)

Query: 1   MPSPQEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALXXXXXXXXXX-XXXLEAL 59
           MPS QE+E AIKKK+GG++P+KP LI+KDHERAYFDSADWAL              LEAL
Sbjct: 29  MPSAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAKPKGPLEAL 88

Query: 60  RPKLQPT-QQQARSRRFLHASVDNEEGLNSPTEDASQN 96
           RPKLQPT QQQ RSRR ++ S +NE+G  +  ED + N
Sbjct: 89  RPKLQPTRQQQQRSRRLINTSSENEDGDGAGAEDMNIN 126



>Os03g0304800 Lg106-like family protein
          Length = 88

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 5  QEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALXXXXXXXXXXXXXLEALRPKLQ 64
           EEEA I+KKYGGI P+KP LI+KDHERAYFDSADW L             +E L+PKL+
Sbjct: 13 MEEEACIEKKYGGIAPKKP-LISKDHERAYFDSADWVLGKQAANSNGSKAAVETLKPKLK 71

Query: 65 PT 66
           T
Sbjct: 72 RT 73



>Os01g0305200 Lg106-like family protein
          Length = 90

 Score = 65.5 bits (158), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 5  QEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALXXXXXXXXXXXXXLEALRPKLQ 64
          Q EE + + KYGGI P+KP LI KDHERAYFDSADWAL              E L+PKLQ
Sbjct: 13 QREEGSSQNKYGGISPKKP-LINKDHERAYFDSADWAL-GKQGASNSTKGTTEPLKPKLQ 70

Query: 65 PT 66
           T
Sbjct: 71 RT 72



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.125    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,404,802
Number of extensions: 104949
Number of successful extensions: 248
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 5
Length of query: 106
Length of database: 17,035,801
Length adjustment: 74
Effective length of query: 32
Effective length of database: 13,171,965
Effective search space: 421502880
Effective search space used: 421502880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)