Os01g0664500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lg106-like family protein.
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Os01g0664500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lg106-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.58 | 0.317 | 12.5 | -0.533 | 0.934 | -1.2 | 0.612 | -0.419 | -0.207 | 9.95 | 53 | 1219 | -- | -- |
| 45.84 | 0.315 | 12.5 | -0.559 | 0.92 | -1.21 | 0.558 | -- | -0.208 | 9.96 | 52 | 1228 | -- | -- |
| 46.94 | 0.319 | 12.5 | -0.527 | 0.915 | -1.19 | -- | -0.206 | -0.21 | 9.98 | 53.21 | 1232 | -- | -- |
| 47 | 0.319 | 12.5 | -0.552 | 0.919 | -1.21 | -- | -- | -0.214 | 9.98 | 53 | 1228 | -- | -- |
| 82.51 | 0.423 | 12.5 | -0.498 | -- | -1.1 | -- | -0.276 | -0.22 | -- | 56.86 | 1463 | -- | -- |
| 76.55 | 0.41 | 12.5 | -0.509 | 0.779 | -- | 0.469 | -- | -0.162 | 9.04 | -- | -- | -- | -- |
| 77.31 | 0.412 | 12.5 | -0.492 | 0.776 | -- | -- | -- | -0.161 | 9.08 | -- | -- | -- | -- |
| 82.62 | 0.423 | 12.5 | -0.525 | -- | -1.13 | -- | -- | -0.232 | -- | 58.39 | 1458 | -- | -- |
| 54.8 | 0.345 | 12.5 | -- | 0.851 | -1.18 | -- | -- | -0.197 | 9.96 | 60.94 | 1281 | -- | -- |
| 112.05 | 0.495 | 12.5 | -0.494 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 83.7 | 0.428 | 12.5 | -- | 0.776 | -- | -- | -- | -0.107 | 9.13 | -- | -- | -- | -- |
| 89.4 | 0.44 | 12.5 | -- | -- | -1.28 | -- | -- | -0.235 | -- | 66.56 | 1464 | -- | -- |
| 118.49 | 0.508 | 12.5 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.24 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 9 | 45.64 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 20 | 45.82 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 33 | 46.04 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 14 |
| 37 | 46.13 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 83 | 46.42 | humidity | 60 | 1440 | > th | dose dependent | sin | 19 | NA |
| 117 | 46.57 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 144 | 46.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 260 | 47.00 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 427 | 47.33 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 480 | 47.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 498 | 47.50 | humidity | 90 | 1440 | < th | dose dependent | sin | 17 | NA |
| 511 | 47.53 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 517 | 47.53 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 534 | 47.58 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 541 | 47.60 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 544 | 47.62 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 584 | 47.71 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 589 | 47.72 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 661 | 47.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 666 | 47.88 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 674 | 47.90 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 680 | 47.91 | humidity | 90 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 683 | 47.92 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 706 | 47.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 713 | 47.96 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 766 | 48.05 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 776 | 48.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 781 | 48.08 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 805 | 48.12 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 23 |