BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0664500 Os01g0664500|AK069846
(142 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0664500 Lg106-like family protein 292 6e-80
Os05g0566600 Lg106-like family protein 145 1e-35
Os01g0249300 Lg106-like family protein 112 1e-25
Os01g0305200 Lg106-like family protein 80 5e-16
Os03g0304800 Lg106-like family protein 80 6e-16
Os12g0433700 Lg106-like family protein 71 3e-13
>Os01g0664500 Lg106-like family protein
Length = 142
Score = 292 bits (747), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MSGMPSDEATGQVRLEGDVSDKKEEKTQEQSEASGMPSPQEEEAAIKKKYGGILPKRTPH 60
MSGMPSDEATGQVRLEGDVSDKKEEKTQEQSEASGMPSPQEEEAAIKKKYGGILPKRTPH
Sbjct: 1 MSGMPSDEATGQVRLEGDVSDKKEEKTQEQSEASGMPSPQEEEAAIKKKYGGILPKRTPH 60
Query: 61 ITKDHDRAYFDSADWALGKQGGSHKPKGPLEALRPKLQPTQQHARARRTPYASADNDECM 120
ITKDHDRAYFDSADWALGKQGGSHKPKGPLEALRPKLQPTQQHARARRTPYASADNDECM
Sbjct: 61 ITKDHDRAYFDSADWALGKQGGSHKPKGPLEALRPKLQPTQQHARARRTPYASADNDECM 120
Query: 121 NLPPEDLIQNGDPIEDKNKEEQ 142
NLPPEDLIQNGDPIEDKNKEEQ
Sbjct: 121 NLPPEDLIQNGDPIEDKNKEEQ 142
>Os05g0566600 Lg106-like family protein
Length = 106
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 84/104 (80%), Gaps = 1/104 (0%)
Query: 36 MPSPQEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQGGS-HKPKGPLEALR 94
MPSPQEEEAAIKKKYGGI+P++ I KDH+RAYFDSADWALGKQGG KPKGPLEALR
Sbjct: 1 MPSPQEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALGKQGGHPQKPKGPLEALR 60
Query: 95 PKLQPTQQHARARRTPYASADNDECMNLPPEDLIQNGDPIEDKN 138
PKLQPTQQ AR+RR +AS DN+E +N P ED QN + E K+
Sbjct: 61 PKLQPTQQQARSRRFLHASVDNEEGLNSPTEDASQNQESNEVKD 104
>Os01g0249300 Lg106-like family protein
Length = 126
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 64/74 (86%), Gaps = 2/74 (2%)
Query: 29 EQSEASGMPSPQEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQG--GSHKP 86
+Q+E + MPS QE+E AIKKK+GG++PK+ P I+KDH+RAYFDSADWALGK G G+ KP
Sbjct: 22 DQTEDNSMPSAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAKP 81
Query: 87 KGPLEALRPKLQPT 100
KGPLEALRPKLQPT
Sbjct: 82 KGPLEALRPKLQPT 95
>Os01g0305200 Lg106-like family protein
Length = 90
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 40 QEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQGGSHKPKGPLEALRPKLQP 99
Q EE + + KYGGI PK+ P I KDH+RAYFDSADWALGKQG S+ KG E L+PKLQ
Sbjct: 13 QREEGSSQNKYGGISPKK-PLINKDHERAYFDSADWALGKQGASNSTKGTTEPLKPKLQR 71
Query: 100 T 100
T
Sbjct: 72 T 72
>Os03g0304800 Lg106-like family protein
Length = 88
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 32 EASGMPSPQEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQGG-SHKPKGPL 90
EA + S EEEA I+KKYGGI PK+ P I+KDH+RAYFDSADW LGKQ S+ K +
Sbjct: 6 EAKSLAS-MEEEACIEKKYGGIAPKK-PLISKDHERAYFDSADWVLGKQAANSNGSKAAV 63
Query: 91 EALRPKLQPTQQHARARRTPYASA 114
E L+PKL+ T H R P ++
Sbjct: 64 ETLKPKLKRTPHHQLPPRKPTCAS 87
>Os12g0433700 Lg106-like family protein
Length = 87
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 27 TQEQSEASGMPSPQEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQGGSHKP 86
++S AS M E++ + KYGGI PK+ P I+KD +RAYFDSADW LGKQ +
Sbjct: 4 CNDKSSASSM----EKQTYAQNKYGGITPKK-PLISKDPERAYFDSADWVLGKQAANGSA 58
Query: 87 KGPLEALRPKLQPTQQHARARRTPYASA 114
+ +E+L+PKL+ T H R P ++
Sbjct: 59 RAAIESLKPKLKRTPHHQLPPRNPTCAS 86
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.306 0.127 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,023,520
Number of extensions: 283018
Number of successful extensions: 806
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 6
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 151 (62.8 bits)