Os01g0305200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lg106-like family protein.
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Os01g0305200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lg106-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.23 | 0.613 | 11.2 | -3.54 | 1.78 | -0.906 | 0.938 | -0.671 | 0.104 | 8.57 | 25.5 | 139 | -- | -- |
| 171.57 | 0.61 | 11.1 | -3.35 | 1.77 | -0.934 | 0.969 | -- | 0.165 | 8.55 | 25.52 | 138 | -- | -- |
| 172.97 | 0.613 | 11.2 | -3.51 | 1.79 | -0.896 | -- | -0.695 | 0.104 | 8.52 | 25.5 | 150 | -- | -- |
| 174.48 | 0.615 | 11.1 | -3.32 | 1.77 | -0.94 | -- | -- | 0.181 | 8.55 | 25.42 | 148 | -- | -- |
| 264.98 | 0.758 | 11.1 | -3 | -- | -1.96 | -- | 0.00626 | 0.37 | -- | 25.8 | 537 | -- | -- |
| 217.49 | 0.691 | 11.2 | -3.61 | 2.17 | -- | 1.12 | -- | -0.241 | 7.38 | -- | -- | -- | -- |
| 220.93 | 0.696 | 11.2 | -3.59 | 2.17 | -- | -- | -- | -0.243 | 7.39 | -- | -- | -- | -- |
| 264.98 | 0.758 | 11.1 | -2.99 | -- | -1.96 | -- | -- | 0.374 | -- | 25.8 | 537 | -- | -- |
| 466.73 | 1.01 | 11.1 | -- | 1.44 | -1.2 | -- | -- | 0.564 | 8.17 | 25.37 | 167 | -- | -- |
| 471.29 | 1.01 | 11.3 | -3.55 | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
| 559.8 | 1.11 | 11.1 | -- | 2.14 | -- | -- | -- | 0.157 | 7.5 | -- | -- | -- | -- |
| 489.99 | 1.03 | 11 | -- | -- | -2.39 | -- | -- | 0.835 | -- | 26 | 557 | -- | -- |
| 803.81 | 1.32 | 11.2 | -- | -- | -- | -- | -- | 0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.62 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 2 | 164.62 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 7 | 164.88 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 8 | 165.03 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 19 | 165.23 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 6 |
| 29 | 165.28 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 6 |
| 136 | 165.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 139 | 165.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 144 | 165.80 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 172 | 165.99 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 186 | 166.04 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 211 | 166.17 | temperature | 20.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 217 | 166.20 | temperature | 20.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 236 | 166.26 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 289 | 166.46 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 294 | 166.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 298 | 166.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 353 | 166.67 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 16 |
| 394 | 166.78 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 418 | 166.83 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 11 | 12 |
| 427 | 166.85 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 7 | 16 |
| 456 | 166.90 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 513 | 167.01 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 12 | NA |
| 543 | 167.06 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 574 | 167.09 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 628 | 167.15 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 703 | 167.24 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 704 | 167.24 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 788 | 167.33 | temperature | 20.0 | 43200 | < th | dose independent | no | NA | NA |
| 830 | 167.37 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 833 | 167.38 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 856 | 167.41 | temperature | 20.0 | 43200 | > th | dose independent | no | NA | NA |
| 891 | 167.45 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 964 | 167.55 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 10 | 2 |