BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0305200 Os01g0305200|AK062385
         (90 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16146.1  | chr4:9142663-9144356 REVERSE LENGTH=103             89   5e-19
AT1G69510.1  | chr1:26126779-26127725 FORWARD LENGTH=138           81   1e-16
AT5G64130.3  | chr5:25664547-25665339 REVERSE LENGTH=141           69   7e-13

>AT4G16146.1 | chr4:9142663-9144356 REVERSE LENGTH=103
          Length = 102

 Score = 89.0 bits (219), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 13 QREEGSSQNKYGGISPKK-PLINKDHERAYFDSADWALGKQGAS--NSTKGTTEPLKPKL 69
          Q+E  S  NKYGG+ PKK PLI+KD +RA+FDSADWAL KQ AS    T    E L+PKL
Sbjct: 16 QQESTSGANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQRTIAAIEKLRPKL 75

Query: 70 QRTAYPQLPPRRPACTSG 87
          QRT   QL PRRP C +G
Sbjct: 76 QRTPRKQLSPRRPTCATG 93



>AT1G69510.1 | chr1:26126779-26127725 FORWARD LENGTH=138
          Length = 137

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 58/87 (66%), Gaps = 4/87 (4%)

Query: 7   DNRAA--TQREEGSSQNKYGGISPKK-PLINKDHERAYFDSADWALGKQGASNSTKGTTE 63
           DN+ +   + EE + + KYGG+ PKK PLI+KDHERA+FDSADWALGKQ      KG  E
Sbjct: 16  DNKVSDEMESEENAIKKKYGGLLPKKIPLISKDHERAFFDSADWALGKQ-KGQKPKGPLE 74

Query: 64  PLKPKLQRTAYPQLPPRRPACTSGATE 90
            L+PKLQ T   Q   RR A +SG TE
Sbjct: 75  ALRPKLQPTPQQQPRARRMAYSSGETE 101



>AT5G64130.3 | chr5:25664547-25665339 REVERSE LENGTH=141
          Length = 140

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 50/93 (53%), Gaps = 27/93 (29%)

Query: 6   EDNRAATQREEGSSQNKYGGISPKKP--------------------------LINKDHER 39
           E +  ++Q+EE   + KYGG+ PKKP                          + N+DHER
Sbjct: 18  EKSMPSSQQEEAVVKKKYGGLMPKKPPLISKVSEVTGLIRDFGVSFLVFLRCVYNQDHER 77

Query: 40  AYFDSADWALGKQGASNSTKGTTEPLKPKLQRT 72
           AYFDSADWALGKQG +   KG  E L+PKLQ T
Sbjct: 78  AYFDSADWALGKQGVAK-PKGPLEALRPKLQPT 109



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.125    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,134,522
Number of extensions: 79613
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 3
Length of query: 90
Length of database: 11,106,569
Length adjustment: 61
Effective length of query: 29
Effective length of database: 9,434,193
Effective search space: 273591597
Effective search space used: 273591597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 104 (44.7 bits)