BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0305200 Os01g0305200|AK062385
         (90 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0305200  Lg106-like family protein                           187   2e-48
Os03g0304800  Lg106-like family protein                           112   7e-26
Os12g0433700  Lg106-like family protein                           107   2e-24
Os01g0664500  Lg106-like family protein                            80   3e-16
Os05g0566600  Lg106-like family protein                            78   2e-15
Os01g0249300  Lg106-like family protein                            74   3e-14

>Os01g0305200 Lg106-like family protein
          Length = 90

 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MASFGEDNRAATQREEGSSQNKYGGISPKKPLINKDHERAYFDSADWALGKQGASNSTKG 60
          MASFGEDNRAATQREEGSSQNKYGGISPKKPLINKDHERAYFDSADWALGKQGASNSTKG
Sbjct: 1  MASFGEDNRAATQREEGSSQNKYGGISPKKPLINKDHERAYFDSADWALGKQGASNSTKG 60

Query: 61 TTEPLKPKLQRTAYPQLPPRRPACTSGATE 90
          TTEPLKPKLQRTAYPQLPPRRPACTSGATE
Sbjct: 61 TTEPLKPKLQRTAYPQLPPRRPACTSGATE 90



>Os03g0304800 Lg106-like family protein
          Length = 88

 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 1  MASFGEDNRAATQREEGSSQNKYGGISPKKPLINKDHERAYFDSADWALGKQGA-SNSTK 59
          MA   E    A+  EE   + KYGGI+PKKPLI+KDHERAYFDSADW LGKQ A SN +K
Sbjct: 1  MAGCDEAKSLASMEEEACIEKKYGGIAPKKPLISKDHERAYFDSADWVLGKQAANSNGSK 60

Query: 60 GTTEPLKPKLQRTAYPQLPPRRPACTS 86
             E LKPKL+RT + QLPPR+P C S
Sbjct: 61 AAVETLKPKLKRTPHHQLPPRKPTCAS 87



>Os12g0433700 Lg106-like family protein
          Length = 87

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 63/86 (73%)

Query: 1  MASFGEDNRAATQREEGSSQNKYGGISPKKPLINKDHERAYFDSADWALGKQGASNSTKG 60
          MA   + + A++  ++  +QNKYGGI+PKKPLI+KD ERAYFDSADW LGKQ A+ S + 
Sbjct: 1  MADCNDKSSASSMEKQTYAQNKYGGITPKKPLISKDPERAYFDSADWVLGKQAANGSARA 60

Query: 61 TTEPLKPKLQRTAYPQLPPRRPACTS 86
            E LKPKL+RT + QLPPR P C S
Sbjct: 61 AIESLKPKLKRTPHHQLPPRNPTCAS 86



>Os01g0664500 Lg106-like family protein
          Length = 142

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 13  QREEGSSQNKYGGISPKK-PLINKDHERAYFDSADWALGKQGASNSTKGTTEPLKPKLQR 71
           Q EE + + KYGGI PK+ P I KDH+RAYFDSADWALGKQG S+  KG  E L+PKLQ 
Sbjct: 40  QEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQGGSHKPKGPLEALRPKLQP 99

Query: 72  T 72
           T
Sbjct: 100 T 100



>Os05g0566600 Lg106-like family protein
          Length = 106

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 13 QREEGSSQNKYGGISPKKP-LINKDHERAYFDSADWALGKQGAS-NSTKGTTEPLKPKLQ 70
          Q EE + + KYGGI P+KP LI KDHERAYFDSADWALGKQG      KG  E L+PKLQ
Sbjct: 5  QEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALGKQGGHPQKPKGPLEALRPKLQ 64

Query: 71 RT 72
           T
Sbjct: 65 PT 66



>Os01g0249300 Lg106-like family protein
          Length = 126

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 50/71 (70%), Gaps = 4/71 (5%)

Query: 6  EDNRA-ATQREEGSSQNKYGGISPKKP-LINKDHERAYFDSADWALGKQGASNST--KGT 61
          EDN   + Q +E + + K+GG+ PKKP LI+KDHERAYFDSADWALGK G   +   KG 
Sbjct: 25 EDNSMPSAQEQELAIKKKFGGLMPKKPPLISKDHERAYFDSADWALGKSGQQGAAKPKGP 84

Query: 62 TEPLKPKLQRT 72
           E L+PKLQ T
Sbjct: 85 LEALRPKLQPT 95



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.125    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,458,651
Number of extensions: 129655
Number of successful extensions: 319
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 6
Length of query: 90
Length of database: 17,035,801
Length adjustment: 60
Effective length of query: 30
Effective length of database: 13,902,961
Effective search space: 417088830
Effective search space used: 417088830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)