BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0664500 Os01g0664500|AK069846
         (142 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69510.1  | chr1:26126779-26127725 FORWARD LENGTH=138          114   2e-26
AT5G64130.3  | chr5:25664547-25665339 REVERSE LENGTH=141          110   3e-25
AT4G16146.1  | chr4:9142663-9144356 REVERSE LENGTH=103             70   3e-13

>AT1G69510.1 | chr1:26126779-26127725 FORWARD LENGTH=138
          Length = 137

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 66/81 (81%), Gaps = 2/81 (2%)

Query: 40  QEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQGGSHKPKGPLEALRPKLQP 99
           + EE AIKKKYGG+LPK+ P I+KDH+RA+FDSADWALGKQ G  KPKGPLEALRPKLQP
Sbjct: 24  ESEENAIKKKYGGLLPKKIPLISKDHERAFFDSADWALGKQKG-QKPKGPLEALRPKLQP 82

Query: 100 T-QQHARARRTPYASADNDEC 119
           T QQ  RARR  Y+S + ++ 
Sbjct: 83  TPQQQPRARRMAYSSGETEDT 103



>AT5G64130.3 | chr5:25664547-25665339 REVERSE LENGTH=141
          Length = 140

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 73/123 (59%), Gaps = 26/123 (21%)

Query: 21  DKKEEKTQEQSEASGMPSPQEEEAAIKKKYGGILPKRTPHITK----------------- 63
           D KE+          MPS Q+EEA +KKKYGG++PK+ P I+K                 
Sbjct: 6   DVKEQGNLTNEAEKSMPSSQQEEAVVKKKYGGLMPKKPPLISKVSEVTGLIRDFGVSFLV 65

Query: 64  --------DHDRAYFDSADWALGKQGGSHKPKGPLEALRPKLQPTQQHARARRTPYASAD 115
                   DH+RAYFDSADWALGKQG   KPKGPLEALRPKLQPTQQ  R R++P A ++
Sbjct: 66  FLRCVYNQDHERAYFDSADWALGKQG-VAKPKGPLEALRPKLQPTQQQTRYRKSPCAPSE 124

Query: 116 NDE 118
             E
Sbjct: 125 GGE 127



>AT4G16146.1 | chr4:9142663-9144356 REVERSE LENGTH=103
          Length = 102

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)

Query: 36  MPSPQEEEAAIKKKYGGILPKRTPHITKDHDRAYFDSADWALGKQGGS--HKPKGPLEAL 93
           + S Q+E  +   KYGG++PK+ P I+KD  RA+FDSADWAL KQ  S   +    +E L
Sbjct: 12  LFSQQQESTSGANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQRTIAAIEKL 71

Query: 94  RPKLQPTQQHARARRTPYASADND 117
           RPKLQ T +   + R P  +  N+
Sbjct: 72  RPKLQRTPRKQLSPRRPTCATGNE 95



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.127    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,686,091
Number of extensions: 164636
Number of successful extensions: 515
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 3
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 106 (45.4 bits)