BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0566600 Os05g0566600|AK058475
         (106 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64130.3  | chr5:25664547-25665339 REVERSE LENGTH=141           89   3e-19
AT1G69510.1  | chr1:26126779-26127725 FORWARD LENGTH=138           89   4e-19
AT4G16146.1  | chr4:9142663-9144356 REVERSE LENGTH=103             64   2e-11

>AT5G64130.3 | chr5:25664547-25665339 REVERSE LENGTH=141
          Length = 140

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 65/122 (53%), Gaps = 28/122 (22%)

Query: 1   MPSPQEEEAAIKKKYGGIVPRKPALIAK-------------------------DHERAYF 35
           MPS Q+EEA +KKKYGG++P+KP LI+K                         DHERAYF
Sbjct: 21  MPSSQQEEAVVKKKYGGLMPKKPPLISKVSEVTGLIRDFGVSFLVFLRCVYNQDHERAYF 80

Query: 36  DSADWALXXXXXXXXXXXXXLEALRPKLQPTQQQARSRRFLHA-SVDNEEGLNSPTEDAS 94
           DSADWAL             LEALRPKLQPTQQQ R R+   A S   E+G  +  E  S
Sbjct: 81  DSADWAL--GKQGVAKPKGPLEALRPKLQPTQQQTRYRKSPCAPSEGGEDGGAAQAEGGS 138

Query: 95  QN 96
            N
Sbjct: 139 GN 140



>AT1G69510.1 | chr1:26126779-26127725 FORWARD LENGTH=138
          Length = 137

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 58/81 (71%), Gaps = 3/81 (3%)

Query: 5   QEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALXXXXXXXXXXXXXLEALRPKLQ 64
           + EE AIKKKYGG++P+K  LI+KDHERA+FDSADWAL             LEALRPKLQ
Sbjct: 24  ESEENAIKKKYGGLLPKKIPLISKDHERAFFDSADWAL--GKQKGQKPKGPLEALRPKLQ 81

Query: 65  PT-QQQARSRRFLHASVDNEE 84
           PT QQQ R+RR  ++S + E+
Sbjct: 82  PTPQQQPRARRMAYSSGETED 102



>AT4G16146.1 | chr4:9142663-9144356 REVERSE LENGTH=103
          Length = 102

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 3  SPQEEEAAIKKKYGGIVPRKPALIAKDHERAYFDSADWALXXXXXXX-XXXXXXLEALRP 61
          S Q+E  +   KYGG+VP+K  LI+KD +RA+FDSADWAL              +E LRP
Sbjct: 14 SQQQESTSGANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQRTIAAIEKLRP 73

Query: 62 KLQPTQQQARSRRFLHASVDNE 83
          KLQ T ++  S R    +  NE
Sbjct: 74 KLQRTPRKQLSPRRPTCATGNE 95



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.125    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,137,862
Number of extensions: 64139
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 3
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 105 (45.1 bits)